Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACFBML_RS04605 | Genome accession | NZ_CP170491 |
| Coordinates | 994208..994507 (+) | Length | 99 a.a. |
| NCBI ID | WP_005446580.1 | Uniprot ID | A0A3A1QB85 |
| Organism | Vibrio harveyi strain LcV6 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 989208..999507
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFBML_RS04595 (ACFBML_04595) | - | 991715..991987 (+) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
| ACFBML_RS04600 (ACFBML_04600) | ppiD | 992203..994062 (+) | 1860 | WP_390338807.1 | peptidylprolyl isomerase | - |
| ACFBML_RS04605 (ACFBML_04605) | comEA | 994208..994507 (+) | 300 | WP_005446580.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| ACFBML_RS04610 (ACFBML_04610) | rrtA | 994660..995211 (-) | 552 | WP_017818999.1 | rhombosortase | - |
| ACFBML_RS04615 (ACFBML_04615) | - | 995215..995832 (+) | 618 | WP_017188356.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACFBML_RS04620 (ACFBML_04620) | - | 995883..997217 (-) | 1335 | WP_390339214.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACFBML_RS04625 (ACFBML_04625) | yfbR | 997221..997805 (-) | 585 | WP_005425568.1 | 5'-deoxynucleotidase | - |
| ACFBML_RS04630 (ACFBML_04630) | - | 997889..999103 (-) | 1215 | WP_029788618.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10936.80 Da Isoelectric Point: 8.9385
>NTDB_id=1057676 ACFBML_RS04605 WP_005446580.1 994208..994507(+) (comEA) [Vibrio harveyi strain LcV6]
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL
Nucleotide
Download Length: 300 bp
>NTDB_id=1057676 ACFBML_RS04605 WP_005446580.1 994208..994507(+) (comEA) [Vibrio harveyi strain LcV6]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAGAAAAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAGAAAAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
82.828 |
100 |
0.828 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
75.758 |
100 |
0.758 |
| comEA | Vibrio cholerae C6706 |
56.566 |
100 |
0.566 |
| comEA | Vibrio cholerae strain A1552 |
56.566 |
100 |
0.566 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
41.071 |
100 |
0.465 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
39.252 |
100 |
0.424 |
| comEA | Legionella pneumophila str. Paris |
37.374 |
100 |
0.374 |
| comEA | Legionella pneumophila strain ERS1305867 |
37.374 |
100 |
0.374 |