Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACFDSG_RS10030 Genome accession   NZ_CP170487
Coordinates   1926782..1928023 (+) Length   413 a.a.
NCBI ID   WP_016765362.1    Uniprot ID   -
Organism   Priestia megaterium strain AJ5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1921782..1933023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDSG_RS10005 ymfI 1922984..1923709 (+) 726 WP_013084748.1 elongation factor P 5-aminopentanone reductase -
  ACFDSG_RS10010 - 1923775..1924035 (+) 261 WP_013058809.1 DUF3243 domain-containing protein -
  ACFDSG_RS10015 - 1924249..1925040 (+) 792 WP_013058808.1 DUF3388 domain-containing protein -
  ACFDSG_RS10020 - 1925053..1926036 (+) 984 WP_228459493.1 RodZ domain-containing protein -
  ACFDSG_RS10025 pgsA 1926181..1926765 (+) 585 WP_016765363.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFDSG_RS10030 cinA 1926782..1928023 (+) 1242 WP_016765362.1 competence/damage-inducible protein A Machinery gene
  ACFDSG_RS10035 recA 1928224..1929261 (+) 1038 WP_013058804.1 recombinase RecA Machinery gene
  ACFDSG_RS10040 rny 1929542..1931101 (+) 1560 WP_013058803.1 ribonuclease Y -
  ACFDSG_RS10045 - 1931183..1931980 (+) 798 WP_028410858.1 TIGR00282 family metallophosphoesterase -
  ACFDSG_RS10050 spoVS 1932204..1932464 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44853.97 Da        Isoelectric Point: 4.9139

>NTDB_id=1057637 ACFDSG_RS10030 WP_016765362.1 1926782..1928023(+) (cinA) [Priestia megaterium strain AJ5]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTSVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1057637 ACFDSG_RS10030 WP_016765362.1 1926782..1928023(+) (cinA) [Priestia megaterium strain AJ5]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGTTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACATTATATGCTATTCCCCGGGCCTCCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGGGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATCGCACCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACGGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACTGGCGGTTTATTCAGCGAACGTTTAACATCTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.634

99.274

0.443

Multiple sequence alignment