Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFIOI_RS08330 Genome accession   NZ_CP170432
Coordinates   1634382..1634852 (-) Length   156 a.a.
NCBI ID   WP_031790067.1    Uniprot ID   A0A380EMI0
Organism   Staphylococcus aureus strain t1476     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1629382..1639852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOI_RS08255 rinB 1629532..1629705 (-) 174 WP_000595256.1 transcriptional activator RinB -
  ACFIOI_RS08260 - 1629702..1629908 (-) 207 WP_000195810.1 DUF1381 domain-containing protein -
  ACFIOI_RS08265 - 1629905..1630150 (-) 246 WP_001282074.1 hypothetical protein -
  ACFIOI_RS08270 - 1630187..1630714 (-) 528 WP_001061837.1 dUTPase -
  ACFIOI_RS08275 - 1630729..1630890 (-) 162 WP_000889680.1 hypothetical protein -
  ACFIOI_RS08280 - 1630891..1631064 (-) 174 WP_000028423.1 hypothetical protein -
  ACFIOI_RS08285 - 1631054..1631305 (-) 252 WP_001065076.1 DUF1024 family protein -
  ACFIOI_RS08290 - 1631298..1631573 (-) 276 WP_000399887.1 hypothetical protein -
  ACFIOI_RS08295 - 1631573..1631974 (-) 402 WP_061824049.1 hypothetical protein -
  ACFIOI_RS08300 - 1631977..1632183 (-) 207 WP_000693989.1 hypothetical protein -
  ACFIOI_RS08305 - 1632197..1632445 (-) 249 WP_031765532.1 phi PVL orf 51-like protein -
  ACFIOI_RS08310 - 1632446..1632817 (-) 372 WP_001140278.1 SA1788 family PVL leukocidin-associated protein -
  ACFIOI_RS08315 - 1632830..1633234 (-) 405 WP_000401972.1 RusA family crossover junction endodeoxyribonuclease -
  ACFIOI_RS08320 - 1633243..1633461 (-) 219 WP_000338525.1 hypothetical protein -
  ACFIOI_RS08325 - 1633468..1634352 (-) 885 WP_410534516.1 DnaD domain protein -
  ACFIOI_RS08330 ssbA 1634382..1634852 (-) 471 WP_031790067.1 single-stranded DNA-binding protein Machinery gene
  ACFIOI_RS08335 - 1634853..1635470 (-) 618 WP_115287106.1 MBL fold metallo-hydrolase -
  ACFIOI_RS08340 - 1635551..1636471 (-) 921 WP_000138481.1 recombinase RecT -
  ACFIOI_RS08345 - 1636473..1638416 (-) 1944 WP_410534518.1 AAA family ATPase -
  ACFIOI_RS08350 - 1638425..1638688 (-) 264 WP_001205732.1 hypothetical protein -
  ACFIOI_RS08355 - 1638697..1638957 (-) 261 WP_000291075.1 DUF1108 family protein -
  ACFIOI_RS08360 - 1639049..1639210 (-) 162 WP_000048121.1 DUF1270 family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17648.43 Da        Isoelectric Point: 4.9816

>NTDB_id=1057285 ACFIOI_RS08330 WP_031790067.1 1634382..1634852(-) (ssbA) [Staphylococcus aureus strain t1476]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFFNIVVFKKQAENANKYLSKGSLAGVDGRLRTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1057285 ACFIOI_RS08330 WP_031790067.1 1634382..1634852(-) (ssbA) [Staphylococcus aureus strain t1476]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTTTTAATATCGTCGTAT
TTAAAAAACAAGCAGAGAACGCTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACGAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380EMI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.622
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

67.949

0.397
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.385
  ssb Vibrio cholerae strain A1552

31.492

100

0.365
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365

Multiple sequence alignment