Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACFIOL_RS03705 | Genome accession | NZ_CP170416 |
| Coordinates | 744694..745164 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934765.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain t21644 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 716147..774671 | 744694..745164 | within | 0 |
Gene organization within MGE regions
Location: 716147..774671
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFIOL_RS03530 | - | 716147..716773 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| ACFIOL_RS03535 | - | 716970..718229 (+) | 1260 | WP_000120305.1 | SdrH family protein | - |
| ACFIOL_RS03540 | mroQ | 718254..718997 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| ACFIOL_RS03545 | groES | 719172..719456 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| ACFIOL_RS03550 | groL | 719532..721148 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| ACFIOL_RS03555 | - | 721243..721789 (-) | 547 | Protein_696 | site-specific integrase | - |
| ACFIOL_RS03560 | - | 721850..722062 (+) | 213 | WP_000128898.1 | LuxR C-terminal-related transcriptional regulator | - |
| ACFIOL_RS03565 | - | 722059..722649 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| ACFIOL_RS03570 | - | 722966..723403 (+) | 438 | WP_072419900.1 | hypothetical protein | - |
| ACFIOL_RS03575 | - | 723509..723952 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| ACFIOL_RS03580 | - | 724806..726113 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| ACFIOL_RS03585 | - | 726274..727185 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| ACFIOL_RS03590 | - | 727247..728092 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| ACFIOL_RS03595 | - | 728464..729687 (-) | 1224 | WP_000206623.1 | ArgE/DapE family deacylase | - |
| ACFIOL_RS03600 | lukH | 730123..731175 (+) | 1053 | WP_000791417.1 | bi-component leukocidin LukGH subunit H | - |
| ACFIOL_RS03605 | lukG | 731197..732213 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| ACFIOL_RS03610 | sph | 732451..733275 (-) | 825 | Protein_707 | sphingomyelin phosphodiesterase | - |
| ACFIOL_RS03615 | - | 733332..734369 (-) | 1038 | WP_000857182.1 | tyrosine-type recombinase/integrase | - |
| ACFIOL_RS03620 | sek | 734453..735181 (-) | 729 | WP_000733771.1 | staphylococcal enterotoxin type K | - |
| ACFIOL_RS03625 | seq | 735205..735933 (-) | 729 | WP_001033320.1 | staphylococcal enterotoxin type Q | - |
| ACFIOL_RS03630 | - | 736129..736899 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| ACFIOL_RS03635 | - | 737058..737282 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| ACFIOL_RS03640 | - | 737300..737560 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| ACFIOL_RS03645 | - | 737584..738123 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| ACFIOL_RS03650 | - | 738180..738929 (+) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| ACFIOL_RS03655 | - | 738945..739142 (+) | 198 | WP_410534684.1 | hypothetical protein | - |
| ACFIOL_RS03660 | - | 739173..739313 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| ACFIOL_RS03665 | - | 739328..739960 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| ACFIOL_RS03670 | - | 740019..740339 (+) | 321 | WP_061734012.1 | DUF771 domain-containing protein | - |
| ACFIOL_RS03675 | - | 740336..740497 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| ACFIOL_RS03680 | - | 740590..740849 (+) | 260 | Protein_721 | DUF1108 family protein | - |
| ACFIOL_RS03685 | - | 740858..741121 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| ACFIOL_RS03690 | - | 741118..743073 (+) | 1956 | WP_047211354.1 | AAA family ATPase | - |
| ACFIOL_RS03695 | - | 743075..743995 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| ACFIOL_RS03700 | - | 744076..744693 (+) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| ACFIOL_RS03705 | ssbA | 744694..745164 (+) | 471 | WP_000934765.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFIOL_RS03710 | - | 745194..746087 (+) | 894 | WP_000148328.1 | DnaD domain protein | - |
| ACFIOL_RS03715 | - | 746094..746312 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| ACFIOL_RS03720 | - | 746321..746725 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACFIOL_RS03725 | - | 746738..747022 (+) | 285 | Protein_730 | SA1788 family PVL leukocidin-associated protein | - |
| ACFIOL_RS03730 | rinB | 747066..747215 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| ACFIOL_RS03735 | - | 747374..748024 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| ACFIOL_RS03740 | - | 748024..748224 (+) | 201 | WP_001570807.1 | DUF1514 family protein | - |
| ACFIOL_RS03745 | - | 748247..748717 (+) | 471 | WP_000282755.1 | hypothetical protein | - |
| ACFIOL_RS03750 | - | 748832..749284 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| ACFIOL_RS03755 | - | 749300..749644 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| ACFIOL_RS03760 | - | 749773..750240 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
| ACFIOL_RS03765 | - | 750243..751937 (+) | 1695 | WP_000133304.1 | terminase large subunit | - |
| ACFIOL_RS03770 | - | 751951..752151 (+) | 201 | WP_000365299.1 | hypothetical protein | - |
| ACFIOL_RS03775 | - | 752157..753407 (+) | 1251 | WP_000511065.1 | phage portal protein | - |
| ACFIOL_RS03780 | - | 753400..753984 (+) | 585 | WP_000032525.1 | HK97 family phage prohead protease | - |
| ACFIOL_RS03785 | - | 754072..755319 (+) | 1248 | WP_000849950.1 | phage major capsid protein | - |
| ACFIOL_RS03790 | - | 755355..755513 (+) | 159 | WP_001252099.1 | hypothetical protein | - |
| ACFIOL_RS03795 | - | 755522..755854 (+) | 333 | WP_001177483.1 | head-tail connector protein | - |
| ACFIOL_RS03800 | - | 755841..756176 (+) | 336 | WP_000975314.1 | head-tail adaptor protein | - |
| ACFIOL_RS03805 | - | 756176..756553 (+) | 378 | WP_000501244.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACFIOL_RS03810 | - | 756550..756930 (+) | 381 | WP_000611454.1 | hypothetical protein | - |
| ACFIOL_RS03815 | - | 756931..757884 (+) | 954 | WP_000570652.1 | major tail protein | - |
| ACFIOL_RS03820 | gpG | 757949..758395 (+) | 447 | WP_000442601.1 | phage tail assembly chaperone G | - |
| ACFIOL_RS03825 | gpGT | 758455..758577 (+) | 123 | WP_000570353.1 | phage tail assembly chaperone GT | - |
| ACFIOL_RS03830 | - | 758633..763282 (+) | 4650 | WP_001133533.1 | phage tail tape measure protein | - |
| ACFIOL_RS03835 | - | 763282..764772 (+) | 1491 | WP_001154317.1 | phage distal tail protein | - |
| ACFIOL_RS03840 | - | 764788..768570 (+) | 3783 | WP_000582131.1 | phage tail spike protein | - |
| ACFIOL_RS03845 | - | 768563..768715 (+) | 153 | WP_001000058.1 | hypothetical protein | - |
| ACFIOL_RS03850 | - | 768761..769048 (+) | 288 | WP_001262621.1 | hypothetical protein | - |
| ACFIOL_RS03855 | - | 769104..769478 (+) | 375 | WP_228567753.1 | hypothetical protein | - |
| ACFIOL_RS03860 | sea | 769851..770624 (+) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| ACFIOL_RS03865 | pepG1 | 770775..770909 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| ACFIOL_RS03870 | - | 770962..771069 (-) | 108 | WP_031762631.1 | hypothetical protein | - |
| ACFIOL_RS03875 | - | 771121..771375 (+) | 255 | WP_000611512.1 | phage holin | - |
| ACFIOL_RS03880 | - | 771387..772142 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| ACFIOL_RS03885 | sak | 772333..772824 (+) | 492 | WP_000920038.1 | staphylokinase | - |
| ACFIOL_RS03890 | - | 773472..773810 (+) | 339 | Protein_763 | SH3 domain-containing protein | - |
| ACFIOL_RS03895 | scn | 774321..774671 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.54 Da Isoelectric Point: 4.9627
>NTDB_id=1057004 ACFIOL_RS03705 WP_000934765.1 744694..745164(+) (ssbA) [Staphylococcus aureus strain t21644]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1057004 ACFIOL_RS03705 WP_000934765.1 744694..745164(+) (ssbA) [Staphylococcus aureus strain t21644]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |