Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LMH68_RS03425 Genome accession   NZ_CP170175
Coordinates   746492..746791 (-) Length   99 a.a.
NCBI ID   WP_017060617.1    Uniprot ID   A0A1E5FUT6
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741492..751791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS03400 (LMH68_003405) - 741757..742989 (+) 1233 WP_017060166.1 pyridoxal phosphate-dependent aminotransferase -
  LMH68_RS03405 (LMH68_003410) yfbR 743334..743918 (+) 585 WP_017060613.1 5'-deoxynucleotidase -
  LMH68_RS03410 (LMH68_003415) - 743974..745317 (+) 1344 WP_017060614.1 anti-phage deoxyguanosine triphosphatase -
  LMH68_RS03415 (LMH68_003420) - 745344..745943 (-) 600 WP_017060615.1 tRNA-uridine aminocarboxypropyltransferase -
  LMH68_RS03420 (LMH68_003425) rrtA 745953..746501 (+) 549 WP_017060616.1 rhombosortase -
  LMH68_RS03425 (LMH68_003430) comEA 746492..746791 (-) 300 WP_017060617.1 ComEA family DNA-binding protein Machinery gene
  LMH68_RS03430 (LMH68_003435) ppiD 747016..748881 (-) 1866 WP_017060618.1 peptidylprolyl isomerase -
  LMH68_RS03435 (LMH68_003440) - 749100..749393 (-) 294 WP_012604504.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10793.34 Da        Isoelectric Point: 4.3449

>NTDB_id=1055426 LMH68_RS03425 WP_017060617.1 746492..746791(-) (comEA) [Vibrio sp. F13 strain 10N.222.55.B3]
MRTIYSTLILSFLMLLSPAVFADSPTKAELYEGIEITVNINTATAEELSALLVGVGDKKAKEIVDYRDQNGAFTTADDLV
SVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1055426 LMH68_RS03425 WP_017060617.1 746492..746791(-) (comEA) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGCGCACGATATATTCAACACTAATTCTTTCATTTCTGATGCTCTTAAGCCCTGCCGTGTTTGCAGACAGCCCAACCAA
GGCTGAGCTTTACGAAGGCATTGAGATTACGGTCAACATCAATACCGCGACGGCAGAAGAACTTTCAGCACTATTGGTTG
GCGTGGGTGACAAGAAAGCCAAAGAAATCGTCGATTACAGAGATCAGAACGGGGCATTTACTACTGCTGATGATTTGGTG
AGTGTCAAAGGGATAGGTGAAGCGACGGTTGAAAAGAACCGCGAAAGAATTCAACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5FUT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

56.701

97.98

0.556
  comEA Vibrio cholerae C6706

56.701

97.98

0.556
  comEA Vibrio parahaemolyticus RIMD 2210633

56.383

94.949

0.535
  comEA Vibrio campbellii strain DS40M4

59.77

87.879

0.525
  comEA Acinetobacter baumannii strain A118

32.308

100

0.424
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA Acinetobacter baylyi ADP1

48.78

82.828

0.404

Multiple sequence alignment