Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BCV20_RS10120 Genome accession   NZ_CP170007
Coordinates   2267004..2267303 (-) Length   99 a.a.
NCBI ID   WP_010439527.1    Uniprot ID   A0AAN0LKD1
Organism   Vibrio cyclitrophicus strain 10N.286.54.F4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2262004..2272303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV20_RS10095 (BCV20_10095) - 2262423..2263655 (+) 1233 WP_016767085.1 pyridoxal phosphate-dependent aminotransferase -
  BCV20_RS10100 (BCV20_10100) yfbR 2263825..2264409 (+) 585 WP_010439536.1 5'-deoxynucleotidase -
  BCV20_RS10105 (BCV20_10105) - 2264464..2265807 (+) 1344 WP_010439534.1 anti-phage deoxyguanosine triphosphatase -
  BCV20_RS10110 (BCV20_10110) - 2265839..2266438 (-) 600 WP_010439531.1 tRNA-uridine aminocarboxypropyltransferase -
  BCV20_RS10115 (BCV20_10115) rrtA 2266448..2266984 (+) 537 WP_016767082.1 rhombosortase -
  BCV20_RS10120 (BCV20_10120) comEA 2267004..2267303 (-) 300 WP_010439527.1 ComEA family DNA-binding protein Machinery gene
  BCV20_RS10125 (BCV20_10125) ppiD 2267548..2269419 (-) 1872 WP_016767081.1 peptidylprolyl isomerase -
  BCV20_RS10130 (BCV20_10130) - 2269641..2269934 (-) 294 WP_012604504.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10811.39 Da        Isoelectric Point: 5.1299

>NTDB_id=1054384 BCV20_RS10120 WP_010439527.1 2267004..2267303(-) (comEA) [Vibrio cyclitrophicus strain 10N.286.54.F4]
MRTIYSTLLLSFLITLSAGVFADSPTKAELYDGIEITVNINKATAEELSALLVGVGDKKAQEIVDYRDKHGAFTKPSDLV
NVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1054384 BCV20_RS10120 WP_010439527.1 2267004..2267303(-) (comEA) [Vibrio cyclitrophicus strain 10N.286.54.F4]
ATGCGAACAATATATTCAACATTACTTCTTTCATTTCTAATTACTCTGAGTGCTGGAGTGTTTGCTGATAGTCCGACTAA
GGCAGAGTTGTACGACGGCATTGAAATCACCGTAAACATCAATAAAGCTACGGCTGAGGAATTATCAGCATTACTTGTTG
GTGTGGGTGACAAAAAAGCCCAAGAGATTGTCGATTATCGGGATAAGCATGGTGCATTTACAAAACCCAGTGACTTGGTC
AATGTGAAAGGTATTGGCGAGGCAACGGTTGAAAAGAATCGTGAGCGAATTCAACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

56.383

94.949

0.535
  comEA Vibrio campbellii strain DS40M4

55.435

92.929

0.515
  comEA Vibrio cholerae strain A1552

52.577

97.98

0.515
  comEA Vibrio cholerae C6706

52.577

97.98

0.515
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA Acinetobacter baylyi ADP1

46.341

82.828

0.384
  comEA Lactococcus lactis subsp. cremoris KW2

44.444

81.818

0.364

Multiple sequence alignment