Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACEY2B_RS06585 Genome accession   NZ_CP169315
Coordinates   1359405..1359809 (+) Length   134 a.a.
NCBI ID   WP_225513299.1    Uniprot ID   -
Organism   Lactococcus lactis strain IFLLLBEK1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1354405..1364809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2B_RS06560 (ACEY2B_06560) - 1354595..1355341 (-) 747 WP_042230284.1 bifunctional metallophosphatase/5'-nucleotidase -
  ACEY2B_RS06565 (ACEY2B_06565) - 1355456..1356475 (-) 1020 WP_136122465.1 DUF475 domain-containing protein -
  ACEY2B_RS06570 (ACEY2B_06570) - 1356523..1357020 (-) 498 WP_015426305.1 VanZ family protein -
  ACEY2B_RS06575 (ACEY2B_06575) - 1357154..1357783 (-) 630 WP_015426304.1 YigZ family protein -
  ACEY2B_RS06580 (ACEY2B_06580) comFA 1357840..1359162 (+) 1323 WP_136122464.1 DEAD/DEAH box helicase Machinery gene
  ACEY2B_RS06585 (ACEY2B_06585) comFC 1359405..1359809 (+) 405 WP_225513299.1 ComF family protein Machinery gene
  ACEY2B_RS06590 (ACEY2B_06590) - 1359845..1360420 (-) 576 WP_015426301.1 nucleotidyltransferase family protein -
  ACEY2B_RS06595 (ACEY2B_06595) - 1360434..1360889 (-) 456 WP_003130653.1 diacylglycerol kinase family protein -
  ACEY2B_RS06600 (ACEY2B_06600) ybeY 1360873..1361361 (-) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  ACEY2B_RS06605 (ACEY2B_06605) - 1361513..1361992 (-) 480 WP_003130650.1 NUDIX hydrolase -
  ACEY2B_RS06610 (ACEY2B_06610) - 1362050..1363018 (-) 969 WP_003130649.1 PhoH family protein -
  ACEY2B_RS06615 (ACEY2B_06615) - 1363120..1364652 (-) 1533 WP_015426300.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15667.08 Da        Isoelectric Point: 9.8798

>NTDB_id=1050485 ACEY2B_RS06585 WP_225513299.1 1359405..1359809(+) (comFC) [Lactococcus lactis strain IFLLLBEK1]
MKDYFSQYKFVGDYRLYQIFEPYFKSISPKSSLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1050485 ACEY2B_RS06585 WP_225513299.1 1359405..1359809(+) (comFC) [Lactococcus lactis strain IFLLLBEK1]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAACCCTATTTTAAAAGTAT
TTCCCCAAAATCCTCTTTGGTTCCGATTCCTATTTCACCCAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGACTAAAAGTCCCTACAAAAGTTATATTAATTGATGACATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

66.418

100

0.664
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.889

100

0.418
  comFC Latilactobacillus sakei subsp. sakei 23K

39.37

94.776

0.373

Multiple sequence alignment