Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AKG93_RS05275 | Genome accession | NZ_CP169261 |
| Coordinates | 1126770..1127069 (+) | Length | 99 a.a. |
| NCBI ID | WP_005446580.1 | Uniprot ID | A0A3A1QB85 |
| Organism | Vibrio harveyi strain VH2 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1121770..1132069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKG93_RS05265 (AKG93_005265) | - | 1124277..1124549 (+) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
| AKG93_RS05270 (AKG93_005270) | ppiD | 1124765..1126624 (+) | 1860 | WP_005446577.1 | peptidylprolyl isomerase | - |
| AKG93_RS05275 (AKG93_005275) | comEA | 1126770..1127069 (+) | 300 | WP_005446580.1 | ComEA family DNA-binding protein | Machinery gene |
| AKG93_RS05280 (AKG93_005280) | rrtA | 1127222..1127773 (-) | 552 | WP_005446582.1 | rhombosortase | - |
| AKG93_RS05285 (AKG93_005285) | - | 1127777..1128394 (+) | 618 | WP_005446584.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AKG93_RS05290 (AKG93_005290) | - | 1128445..1129779 (-) | 1335 | WP_050548759.1 | anti-phage deoxyguanosine triphosphatase | - |
| AKG93_RS05295 (AKG93_005295) | yfbR | 1129783..1130367 (-) | 585 | WP_005425568.1 | 5'-deoxynucleotidase | - |
| AKG93_RS05300 (AKG93_005300) | - | 1130451..1131665 (-) | 1215 | WP_005446588.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10936.80 Da Isoelectric Point: 8.9385
>NTDB_id=1050027 AKG93_RS05275 WP_005446580.1 1126770..1127069(+) (comEA) [Vibrio harveyi strain VH2]
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL
MKWMLTLCLLLLAPMSWAEESKSANTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLT
KVKGIGDATVKKNEERILL
Nucleotide
Download Length: 300 bp
>NTDB_id=1050027 AKG93_RS05275 WP_005446580.1 1126770..1127069(+) (comEA) [Vibrio harveyi strain VH2]
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
ATGAAATGGATGTTAACACTGTGCTTATTACTCTTAGCACCGATGAGCTGGGCAGAAGAGAGTAAGTCGGCTAACACAAA
AGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGAGATTGCCACCATGCTAAAGG
GTATTGGTGAAAAGAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTAAAACCGTTGCGGATCTGACC
AAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
82.828 |
100 |
0.828 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
75.758 |
100 |
0.758 |
| comEA | Vibrio cholerae C6706 |
56.566 |
100 |
0.566 |
| comEA | Vibrio cholerae strain A1552 |
56.566 |
100 |
0.566 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
41.071 |
100 |
0.465 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
39.252 |
100 |
0.424 |
| comEA | Legionella pneumophila str. Paris |
37.374 |
100 |
0.374 |
| comEA | Legionella pneumophila strain ERS1305867 |
37.374 |
100 |
0.374 |