Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACEQ85_RS09555 Genome accession   NZ_CP168966
Coordinates   2011145..2013271 (+) Length   708 a.a.
NCBI ID   WP_068563954.1    Uniprot ID   -
Organism   Acinetobacter pittii strain LS-AP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2006145..2018271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEQ85_RS09535 (ACEQ85_09535) pilM 2008096..2009154 (+) 1059 WP_373882522.1 pilus assembly protein PilM Machinery gene
  ACEQ85_RS09540 (ACEQ85_09540) pilN 2009154..2009795 (+) 642 WP_033848908.1 PilN domain-containing protein Machinery gene
  ACEQ85_RS09545 (ACEQ85_09545) pilO 2009792..2010544 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACEQ85_RS09550 (ACEQ85_09550) pilP 2010555..2011082 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  ACEQ85_RS09555 (ACEQ85_09555) pilQ 2011145..2013271 (+) 2127 WP_068563954.1 type IV pilus secretin PilQ Machinery gene
  ACEQ85_RS09560 (ACEQ85_09560) aroK 2013283..2013852 (+) 570 WP_002116987.1 shikimate kinase AroK -
  ACEQ85_RS09565 (ACEQ85_09565) aroB 2013881..2014963 (+) 1083 WP_044103315.1 3-dehydroquinate synthase -
  ACEQ85_RS09570 (ACEQ85_09570) - 2014980..2015849 (+) 870 WP_373882523.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76604.03 Da        Isoelectric Point: 6.5432

>NTDB_id=1048992 ACEQ85_RS09555 WP_068563954.1 2011145..2013271(+) (pilQ) [Acinetobacter pittii strain LS-AP]
MNHVFRQFSMGAIAIAITQVASAQVSMTNIVPTQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLVLDFNKAQLNLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAVVKPVAISAAQPQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGIITIQSTGSYEYMAYQAENKLTI
SLKRPQDKSVNTSSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIHLSYAKAIDLLKLIEDSRDGKGAVANRTANSDSLALES
LLSSRGSAVADTRTNTLIINDTAQNIDKIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDDTTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQSAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=1048992 ACEQ85_RS09555 WP_068563954.1 2011145..2013271(+) (pilQ) [Acinetobacter pittii strain LS-AP]
ATGAATCACGTATTCCGTCAGTTTTCGATGGGGGCTATAGCGATTGCAATTACGCAAGTTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCGACGCAAATAGCGGGCCAAGGTACAGAAATTCGAGTGATATTTAATGGCTTGCCGCCACAACCGC
AAGCATATCAACTTGAAAATCCTTCACGTTTGGTTTTAGATTTTAATAAAGCGCAGCTGAATTTAACCCAATCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACAACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGCTGTAGTTAAACCTG
TAGCAATAAGTGCGGCACAACCCCAAGGCGTTTCAAATATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATCGTT
ATTGACCTATTGGGAAGTAACACTCCTGTTGATGTGCAGCAACAAGGTAGCAAAGTTGTAGTAAGAACTTTAGGTTCTAA
AATTCCTACTCATTTAGCTAAACGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCATATAATGATA
AAGGCAATGGTATTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACAATT
AGTCTAAAACGTCCTCAAGATAAAAGTGTAAACACTTCATCTAAACCATCTAATTATTCTGGTAATAAGCTTTCTCTTGA
TTTTCAGGATATTGAAGTTCGTAGGGTTCTACAGTTACTTGCAGATTTCACTGGTATTAATATGGTGGCTGCCGATAGTG
TTCAGGGTAATATTACGTTGCGGTTAAAAGATGTTCCGTGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATCTG
GATAAACGTAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCTGAACTGATCAAGGCTGAAGATGATGAAGCAAAAGC
TTTAGCGCAAACGATTAAGTTAGCGCCGATCCAAACCGATTACATTCATTTGAGTTATGCCAAAGCCATCGATTTACTTA
AGTTAATTGAGGATTCTCGTGACGGGAAGGGGGCGGTTGCGAATCGTACTGCAAACTCGGATTCTCTTGCGTTGGAGAGC
TTGCTAAGTTCACGCGGTAGTGCTGTGGCTGATACACGGACTAATACTTTAATTATTAATGACACAGCACAAAACATTGA
TAAAATCCGTAAAATGATTGATTTACTTGATGTACAAGTGAAGCAGGTTATGGTTGAGGCGCGTATTGTAAGAGCCTCTA
CTTCTTTTACCAAAGAGCTTGGCGTCAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACAACCTTATGGAATTTACGAGAGCCCAAAAAAGATGATACTACCGGTGGTTATAAATATACGATTGAACG
TCCAGATAATTTAAATGTCGATTTAGGGGTTTCTAATCCAGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTGCAAGCCGATGGCTATGGTGAAGTTATTTCCACACCTAAAGTCATGACCGCA
GATAAGCAATCTGCAAAAGTCGCTACTGGTCAGCAAGTTCCTTATTTGATGACGACTACTTCTGGTGCGGGTTCCACAGC
AACTACTTCATTTAAAGATGCGCTCCTAAGCTTGGATGTTACTCCGAGCATTACACCTGATGGTAAAATTCAAATGAAAT
TGGATATTTCAAAGGATTCTGTAGCTGGTGAAGCACCTAATGGTGAATTAATTTTAAATAAGAATAATATTAATACCAAT
GTACTTGTTAATAATGGTGAGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACGACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTGGTTGGGCGTTTGTTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-118)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

85.298

100

0.869
  pilQ Acinetobacter baumannii strain A118

85.16

100

0.867
  comQ Acinetobacter baylyi ADP1

73.045

100

0.739
  pilQ Pseudomonas aeruginosa PAK

39.291

99.576

0.391

Multiple sequence alignment