Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACEPXD_RS19715 Genome accession   NZ_CP168493
Coordinates   3921714..3922223 (-) Length   169 a.a.
NCBI ID   WP_391118721.1    Uniprot ID   -
Organism   Psychrobacillus sp. L3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3916714..3927223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXD_RS19695 (ACEPXD_19695) rplI 3917912..3918361 (-) 450 WP_391118714.1 50S ribosomal protein L9 -
  ACEPXD_RS19700 (ACEPXD_19700) - 3918358..3920334 (-) 1977 WP_391118716.1 DHH family phosphoesterase -
  ACEPXD_RS19705 (ACEPXD_19705) - 3920347..3921288 (-) 942 WP_391118718.1 YybS family protein -
  ACEPXD_RS19710 (ACEPXD_19710) rpsR 3921431..3921667 (-) 237 WP_142608051.1 30S ribosomal protein S18 -
  ACEPXD_RS19715 (ACEPXD_19715) ssbA 3921714..3922223 (-) 510 WP_391118721.1 single-stranded DNA-binding protein Machinery gene
  ACEPXD_RS19720 (ACEPXD_19720) rpsF 3922262..3922555 (-) 294 WP_151701887.1 30S ribosomal protein S6 -
  ACEPXD_RS19725 (ACEPXD_19725) - 3922788..3923330 (+) 543 WP_391118724.1 DUF3267 domain-containing protein -
  ACEPXD_RS19730 (ACEPXD_19730) ychF 3924211..3925311 (-) 1101 WP_391118726.1 redox-regulated ATPase YchF -
  ACEPXD_RS19735 (ACEPXD_19735) - 3925399..3925599 (-) 201 WP_391118728.1 DUF951 domain-containing protein -
  ACEPXD_RS19740 (ACEPXD_19740) - 3925646..3926470 (-) 825 WP_391118730.1 mechanosensitive ion channel family protein -
  ACEPXD_RS19745 (ACEPXD_19745) yyaC 3926549..3927148 (+) 600 WP_391118732.1 spore protease YyaC -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18757.56 Da        Isoelectric Point: 4.7719

>NTDB_id=1044245 ACEPXD_RS19715 WP_391118721.1 3921714..3922223(-) (ssbA) [Psychrobacillus sp. L3]
MINRVVLVGRLTKDPELRYTPSGVAMARFTLAVNRTFSNQQGEREADFINCVVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSSSGERSQGGQPTGGGQQQQQQNSFPTYQQNQPMNQQNYTRVDEDPFANSSGPI
EVSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1044245 ACEPXD_RS19715 WP_391118721.1 3921714..3922223(-) (ssbA) [Psychrobacillus sp. L3]
ATGATTAACCGTGTCGTTTTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGCTATACACCAAGTGGTGTTGCAATGGC
AAGATTTACACTAGCTGTTAATCGAACATTCTCCAACCAACAAGGTGAAAGAGAAGCTGATTTTATCAACTGTGTTGTTT
GGAGAAAGCAAGCGGAAAACACGGCTAACTTTTTGAAAAAAGGAAGTTTAGCTGGGGTTGAAGGGCGTATTCAGACAGGC
AGTTATGAAGGACAAGATGGAAAACGTGTTTATACGACGGATGTTGTCGCAGACAGTGTTCAGTTTTTAGAACCACGTAG
TAGTTCTGGTGAACGAAGCCAAGGTGGACAACCAACTGGTGGCGGACAGCAGCAACAACAACAAAATTCATTTCCGACAT
ATCAGCAAAACCAACCAATGAATCAGCAAAATTATACACGTGTTGATGAAGATCCATTTGCAAACAGTAGCGGGCCAATC
GAAGTATCGGATGACGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.069

100

0.639
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.722

0.391
  ssb Neisseria gonorrhoeae MS11

35.593

100

0.373
  ssb Neisseria meningitidis MC58

35.795

100

0.373
  ssb Glaesserella parasuis strain SC1401

34.831

100

0.367
  ssb Vibrio cholerae strain A1552

34.078

100

0.361

Multiple sequence alignment