Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACCK19_RS05830 | Genome accession | NZ_CP168091 |
| Coordinates | 1173667..1174137 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934764.1 | Uniprot ID | A0A9P4DKA4 |
| Organism | Staphylococcus aureus strain CUBIST-16 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1163514..1206080 | 1173667..1174137 | within | 0 |
Gene organization within MGE regions
Location: 1163514..1206080
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCK19_RS05740 (ACCK19_05740) | - | 1163514..1164899 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| ACCK19_RS05745 (ACCK19_05745) | - | 1165106..1165228 (-) | 123 | WP_001077637.1 | hypothetical protein | - |
| ACCK19_RS05750 (ACCK19_05750) | - | 1165249..1165710 (-) | 462 | WP_000525016.1 | hypothetical protein | - |
| ACCK19_RS05755 (ACCK19_05755) | - | 1165723..1166046 (-) | 324 | WP_001260487.1 | helix-turn-helix domain-containing protein | - |
| ACCK19_RS05760 (ACCK19_05760) | - | 1166210..1166458 (+) | 249 | WP_000272858.1 | helix-turn-helix domain-containing protein | - |
| ACCK19_RS05765 (ACCK19_05765) | - | 1166473..1166634 (+) | 162 | WP_001153175.1 | hypothetical protein | - |
| ACCK19_RS05770 (ACCK19_05770) | - | 1166627..1166863 (-) | 237 | WP_000856472.1 | hypothetical protein | - |
| ACCK19_RS05775 (ACCK19_05775) | - | 1166928..1167680 (+) | 753 | WP_001645566.1 | phage antirepressor KilAC domain-containing protein | - |
| ACCK19_RS05780 (ACCK19_05780) | - | 1167696..1168484 (+) | 789 | WP_001148566.1 | phage antirepressor KilAC domain-containing protein | - |
| ACCK19_RS05785 (ACCK19_05785) | - | 1168501..1168695 (+) | 195 | WP_000390105.1 | hypothetical protein | - |
| ACCK19_RS05790 (ACCK19_05790) | - | 1168899..1169129 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| ACCK19_RS05795 (ACCK19_05795) | - | 1169179..1169325 (+) | 147 | WP_000230553.1 | hypothetical protein | - |
| ACCK19_RS05800 (ACCK19_05800) | - | 1169309..1169470 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| ACCK19_RS05805 (ACCK19_05805) | - | 1169563..1169823 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| ACCK19_RS05810 (ACCK19_05810) | - | 1169832..1170116 (+) | 285 | WP_372487372.1 | hypothetical protein | - |
| ACCK19_RS05815 (ACCK19_05815) | - | 1170091..1172046 (+) | 1956 | WP_049873726.1 | AAA family ATPase | - |
| ACCK19_RS05820 (ACCK19_05820) | - | 1172048..1172968 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| ACCK19_RS05825 (ACCK19_05825) | - | 1173049..1173666 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| ACCK19_RS05830 (ACCK19_05830) | ssbA | 1173667..1174137 (+) | 471 | WP_000934764.1 | single-stranded DNA-binding protein | Machinery gene |
| ACCK19_RS05835 (ACCK19_05835) | - | 1174167..1175051 (+) | 885 | WP_205007974.1 | DnaD domain protein | - |
| ACCK19_RS05840 (ACCK19_05840) | - | 1175058..1175276 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| ACCK19_RS05845 (ACCK19_05845) | - | 1175285..1175689 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACCK19_RS05850 (ACCK19_05850) | - | 1175702..1176070 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACCK19_RS05855 (ACCK19_05855) | - | 1176074..1176316 (+) | 243 | WP_000131363.1 | SAV1978 family virulence-associated passenger protein | - |
| ACCK19_RS05860 (ACCK19_05860) | - | 1176331..1176537 (+) | 207 | WP_000693989.1 | hypothetical protein | - |
| ACCK19_RS05865 (ACCK19_05865) | - | 1176540..1176941 (+) | 402 | WP_000695757.1 | hypothetical protein | - |
| ACCK19_RS05870 (ACCK19_05870) | - | 1176938..1177285 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| ACCK19_RS05875 (ACCK19_05875) | - | 1177282..1177590 (+) | 309 | WP_000144711.1 | hypothetical protein | - |
| ACCK19_RS05880 (ACCK19_05880) | - | 1177583..1177818 (+) | 236 | Protein_1148 | DUF1024 family protein | - |
| ACCK19_RS05885 (ACCK19_05885) | - | 1177823..1178332 (+) | 510 | WP_000185636.1 | dUTP diphosphatase | - |
| ACCK19_RS05890 (ACCK19_05890) | - | 1178369..1178605 (+) | 237 | WP_000195816.1 | DUF1381 domain-containing protein | - |
| ACCK19_RS05895 (ACCK19_05895) | - | 1178630..1178866 (+) | 237 | WP_000483478.1 | hypothetical protein | - |
| ACCK19_RS05900 (ACCK19_05900) | rinB | 1178859..1179032 (+) | 174 | WP_000591892.1 | transcriptional activator RinB | - |
| ACCK19_RS05905 (ACCK19_05905) | - | 1179033..1179398 (+) | 366 | WP_000989954.1 | hypothetical protein | - |
| ACCK19_RS05910 (ACCK19_05910) | - | 1179399..1179545 (+) | 147 | WP_000989960.1 | hypothetical protein | - |
| ACCK19_RS05915 (ACCK19_05915) | - | 1179569..1179991 (+) | 423 | WP_000162697.1 | RinA family phage transcriptional activator | - |
| ACCK19_RS05920 (ACCK19_05920) | - | 1180178..1180618 (+) | 441 | WP_001003271.1 | terminase small subunit | - |
| ACCK19_RS05925 (ACCK19_05925) | - | 1180605..1181882 (+) | 1278 | WP_000169946.1 | PBSX family phage terminase large subunit | - |
| ACCK19_RS05930 (ACCK19_05930) | - | 1181893..1183428 (+) | 1536 | WP_205007970.1 | phage portal protein | - |
| ACCK19_RS05935 (ACCK19_05935) | - | 1183435..1184430 (+) | 996 | WP_001556698.1 | minor capsid protein | - |
| ACCK19_RS05940 (ACCK19_05940) | - | 1184503..1184673 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| ACCK19_RS05945 (ACCK19_05945) | - | 1184701..1184788 (+) | 88 | Protein_1161 | hypothetical protein | - |
| ACCK19_RS05950 (ACCK19_05950) | - | 1184782..1185402 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| ACCK19_RS05955 (ACCK19_05955) | - | 1185416..1186390 (+) | 975 | WP_000438511.1 | phage major capsid protein | - |
| ACCK19_RS05960 (ACCK19_05960) | - | 1186412..1186699 (+) | 288 | WP_001114086.1 | hypothetical protein | - |
| ACCK19_RS05965 (ACCK19_05965) | - | 1186708..1187040 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| ACCK19_RS05970 (ACCK19_05970) | - | 1187037..1187339 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| ACCK19_RS05975 (ACCK19_05975) | - | 1187339..1187686 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACCK19_RS05980 (ACCK19_05980) | - | 1187698..1188081 (+) | 384 | WP_000188653.1 | hypothetical protein | - |
| ACCK19_RS05985 (ACCK19_05985) | - | 1188100..1188681 (+) | 582 | WP_000002583.1 | phage major tail protein, TP901-1 family | - |
| ACCK19_RS05990 (ACCK19_05990) | - | 1188743..1189108 (+) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| ACCK19_RS05995 (ACCK19_05995) | - | 1189138..1189482 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| ACCK19_RS06000 (ACCK19_06000) | - | 1189499..1192963 (+) | 3465 | WP_001657246.1 | hypothetical protein | - |
| ACCK19_RS06005 (ACCK19_06005) | - | 1192976..1193923 (+) | 948 | WP_020808082.1 | phage tail family protein | - |
| ACCK19_RS06010 (ACCK19_06010) | - | 1193932..1195833 (+) | 1902 | WP_001657243.1 | SGNH/GDSL hydrolase family protein | - |
| ACCK19_RS06015 (ACCK19_06015) | - | 1195848..1197758 (+) | 1911 | WP_000369012.1 | hypothetical protein | - |
| ACCK19_RS06020 (ACCK19_06020) | - | 1197758..1199581 (+) | 1824 | WP_001657241.1 | phage baseplate upper protein | - |
| ACCK19_RS06025 (ACCK19_06025) | - | 1199581..1199958 (+) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| ACCK19_RS06030 (ACCK19_06030) | - | 1199962..1200135 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| ACCK19_RS06035 (ACCK19_06035) | - | 1200176..1200475 (+) | 300 | WP_000466770.1 | DUF2951 domain-containing protein | - |
| ACCK19_RS06040 (ACCK19_06040) | - | 1200612..1202510 (+) | 1899 | WP_000524017.1 | glucosaminidase domain-containing protein | - |
| ACCK19_RS06045 (ACCK19_06045) | - | 1202523..1203761 (+) | 1239 | WP_000276641.1 | BppU family phage baseplate upper protein | - |
| ACCK19_RS06050 (ACCK19_06050) | - | 1203766..1204161 (+) | 396 | WP_000398862.1 | hypothetical protein | - |
| ACCK19_RS06055 (ACCK19_06055) | - | 1204217..1204654 (+) | 438 | WP_000354121.1 | phage holin | - |
| ACCK19_RS06060 (ACCK19_06060) | - | 1204635..1206080 (+) | 1446 | WP_001148123.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17627.49 Da Isoelectric Point: 5.2672
>NTDB_id=1042085 ACCK19_RS05830 WP_000934764.1 1173667..1174137(+) (ssbA) [Staphylococcus aureus strain CUBIST-16]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1042085 ACCK19_RS05830 WP_000934764.1 1173667..1174137(+) (ssbA) [Staphylococcus aureus strain CUBIST-16]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |