Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ24_RS15585 Genome accession   NZ_CP167237
Coordinates   3696046..3697302 (+) Length   418 a.a.
NCBI ID   WP_372166332.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. patelii strain NCPPB 840     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3694059..3752473 3696046..3697302 within 0


Gene organization within MGE regions


Location: 3694059..3752473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ24_RS15575 (ACCQ24_15575) - 3694697..3695152 (-) 456 WP_372166330.1 pilin -
  ACCQ24_RS15580 (ACCQ24_15580) - 3695259..3695696 (-) 438 WP_372166331.1 pilin -
  ACCQ24_RS15585 (ACCQ24_15585) pilC 3696046..3697302 (+) 1257 WP_372166332.1 type II secretion system F family protein Machinery gene
  ACCQ24_RS15590 (ACCQ24_15590) - 3697309..3698172 (+) 864 WP_008576868.1 A24 family peptidase -
  ACCQ24_RS15595 (ACCQ24_15595) coaE 3698186..3698791 (+) 606 WP_014090857.1 dephospho-CoA kinase -
  ACCQ24_RS15600 (ACCQ24_15600) - 3698861..3700195 (-) 1335 WP_164738656.1 HAMP domain-containing sensor histidine kinase -
  ACCQ24_RS15605 (ACCQ24_15605) - 3700188..3700865 (-) 678 WP_003490678.1 response regulator transcription factor -
  ACCQ24_RS15610 (ACCQ24_15610) - 3700891..3701334 (-) 444 WP_057681808.1 hypothetical protein -
  ACCQ24_RS15615 (ACCQ24_15615) rimK 3701543..3702460 (-) 918 WP_008576854.1 30S ribosomal protein S6--L-glutamate ligase -
  ACCQ24_RS15620 (ACCQ24_15620) glgX 3702931..3705063 (+) 2133 WP_031423887.1 glycogen debranching protein GlgX -
  ACCQ24_RS15625 (ACCQ24_15625) - 3705687..3706079 (-) 393 WP_372166333.1 H-NS family nucleoid-associated regulatory protein -
  ACCQ24_RS15630 (ACCQ24_15630) - 3706170..3706562 (-) 393 WP_008576845.1 hypothetical protein -
  ACCQ24_RS15635 (ACCQ24_15635) - 3706673..3707365 (-) 693 WP_071118755.1 thermonuclease family protein -
  ACCQ24_RS15640 (ACCQ24_15640) - 3707558..3707716 (-) 159 WP_159065595.1 hypothetical protein -
  ACCQ24_RS15645 (ACCQ24_15645) - 3708342..3708710 (+) 369 WP_015471731.1 hypothetical protein -
  ACCQ24_RS15650 (ACCQ24_15650) - 3708754..3710343 (-) 1590 WP_372166335.1 MobA/MobL family protein -
  ACCQ24_RS15655 (ACCQ24_15655) - 3710602..3710928 (+) 327 WP_372166336.1 hypothetical protein -
  ACCQ24_RS15660 (ACCQ24_15660) - 3711110..3711520 (+) 411 WP_372166337.1 HNH endonuclease -
  ACCQ24_RS15665 (ACCQ24_15665) - 3711533..3712183 (-) 651 WP_371893100.1 hypothetical protein -
  ACCQ24_RS15670 (ACCQ24_15670) - 3712224..3716234 (-) 4011 WP_372166338.1 hypothetical protein -
  ACCQ24_RS15675 (ACCQ24_15675) - 3716272..3716910 (-) 639 WP_014090882.1 DUF1629 domain-containing protein -
  ACCQ24_RS15680 (ACCQ24_15680) - 3717213..3718001 (+) 789 WP_372166339.1 hypothetical protein -
  ACCQ24_RS15685 (ACCQ24_15685) - 3718038..3718232 (+) 195 WP_372166341.1 hypothetical protein -
  ACCQ24_RS15690 (ACCQ24_15690) - 3718258..3718491 (-) 234 WP_372166342.1 hypothetical protein -
  ACCQ24_RS15695 (ACCQ24_15695) - 3718577..3718744 (-) 168 Protein_3079 JAB domain-containing protein -
  ACCQ24_RS15700 (ACCQ24_15700) - 3719337..3719606 (-) 270 Protein_3080 IS3 family transposase -
  ACCQ24_RS15710 (ACCQ24_15710) - 3720757..3721194 (-) 438 WP_372166343.1 hypothetical protein -
  ACCQ24_RS15715 (ACCQ24_15715) - 3721157..3721828 (-) 672 WP_372166344.1 hypothetical protein -
  ACCQ24_RS15720 (ACCQ24_15720) - 3721825..3723294 (-) 1470 WP_372166345.1 N-6 DNA methylase -
  ACCQ24_RS15725 (ACCQ24_15725) - 3723299..3724021 (-) 723 WP_372166346.1 hypothetical protein -
  ACCQ24_RS15730 (ACCQ24_15730) - 3724021..3724632 (-) 612 WP_228734389.1 transcriptional regulator -
  ACCQ24_RS15735 (ACCQ24_15735) hsdR 3724720..3727101 (-) 2382 WP_372166347.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  ACCQ24_RS15740 (ACCQ24_15740) - 3727181..3727337 (-) 157 Protein_3088 type II toxin-antitoxin system RelE/ParE family toxin -
  ACCQ24_RS15745 (ACCQ24_15745) - 3727372..3727962 (-) 591 WP_372166348.1 TetR/AcrR family transcriptional regulator -
  ACCQ24_RS15750 (ACCQ24_15750) bdcA 3728033..3728746 (+) 714 WP_014089566.1 SDR family oxidoreductase -
  ACCQ24_RS15755 (ACCQ24_15755) - 3729470..3732142 (-) 2673 WP_372166349.1 M1 family metallopeptidase -
  ACCQ24_RS15760 (ACCQ24_15760) - 3732518..3733810 (-) 1293 WP_005913957.1 adenylosuccinate synthase -
  ACCQ24_RS15765 (ACCQ24_15765) hflC 3734335..3735198 (-) 864 WP_008578171.1 protease modulator HflC -
  ACCQ24_RS15770 (ACCQ24_15770) hflK 3735198..3736325 (-) 1128 WP_011346658.1 FtsH protease activity modulator HflK -
  ACCQ24_RS15775 (ACCQ24_15775) pilH 3737015..3737401 (-) 387 WP_008578169.1 twitching motility response regulator PilH -
  ACCQ24_RS15780 (ACCQ24_15780) - 3737895..3738794 (-) 900 WP_218489239.1 DnaJ C-terminal domain-containing protein -
  ACCQ24_RS15785 (ACCQ24_15785) - 3739208..3739684 (-) 477 WP_008571577.1 Hsp20/alpha crystallin family protein -
  ACCQ24_RS15790 (ACCQ24_15790) - 3739847..3740329 (+) 483 WP_008571578.1 peroxiredoxin -
  ACCQ24_RS15795 (ACCQ24_15795) - 3740370..3740930 (+) 561 WP_008571580.1 bacterioferritin -
  ACCQ24_RS15800 (ACCQ24_15800) pbpC 3741280..3743700 (-) 2421 WP_372166350.1 penicillin-binding protein 1C -
  ACCQ24_RS15805 (ACCQ24_15805) - 3744092..3745039 (-) 948 WP_031421465.1 glycerophosphodiester phosphodiesterase family protein -
  ACCQ24_RS15810 (ACCQ24_15810) - 3745184..3748186 (-) 3003 WP_372166351.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45434.83 Da        Isoelectric Point: 10.2788

>NTDB_id=1039096 ACCQ24_RS15585 WP_372166332.1 3696046..3697302(+) (pilC) [Xanthomonas axonopodis pv. patelii strain NCPPB 840]
MSAVRNAVKTKTAAPAEHMSPFIWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALVGAAIGSVFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1039096 ACCQ24_RS15585 WP_372166332.1 3696046..3697302(+) (pilC) [Xanthomonas axonopodis pv. patelii strain NCPPB 840]
ATGTCAGCAGTACGTAACGCAGTCAAGACGAAGACCGCCGCACCGGCGGAGCATATGAGCCCGTTTATCTGGGAGGGAAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGTGCCGAGCTGCGACGCCAGG
GCATTACCCCTCTCGTTGTGAAAGTTAAGCCGAAGCCACTATTCGGCGCTGCAGGAAAGAAGGTCTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAATCGGGCGTGCCGATTGTCGGCGCGCTAGAGATCATTGGTAGCGG
CCAGAAAAATCCGCGCATGCGCACAATGGTCGGCCAGATCAGGACAGATATCGAAGGCGGAGCATCGCTTTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAAGCAGGCGAAGGCGCAGGCGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAAAACCTTGAAGCCCTAAAAGGTAAGATCAAGAAGGCCCTGTTCTACCCTGC
CATGGTAATGGCGGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTCCCTCAATTTGAAGATGTCTTCAAAG
GCTTTGGCGCGGAGTTGCCCGCGTTCACACAGATGATCGTCAATCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTGTTGGCGCTGCGATTGGGTCTGTTTTCGCATACAAGCGTTCACCAGCAATGCAGCATGGCATGGACCG
CCTGGTGCTAAAGGTGCCGATCATCGGTCAAATCATGCACAACAGCTCTATAGCCAGATTCGCCCGAACAACGGCAGTGA
CCTTTAAGGCCGGCGTACCGCTAGTCGAGGCGCTAGGCATCGTGGCCGGTGCTACAGGCAACTCGGTCTATGAAAAAGCA
GTGCTGCGCATGCGCGAAGACGTCTCCGTTGGTTACCCGGTCAATGTCGCGATGAAGCAGGTCAATCTCTTCCCCCACAT
GGTGGTGCAGATGACCGCCATCGGTGAAGAAGCGGGCGCGCTGGATGCCATGCTGTTCAAGGTAGCGGAGTATTTCGAAC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCTTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.518

95.215

0.51
  pilC Acinetobacter baylyi ADP1

51.478

97.129

0.5
  pilC Acinetobacter baumannii D1279779

51.613

96.411

0.498
  pilC Legionella pneumophila strain ERS1305867

52.525

94.737

0.498
  pilG Neisseria meningitidis 44/76-A

43.21

96.89

0.419
  pilG Neisseria gonorrhoeae MS11

43.467

95.215

0.414
  pilC Vibrio cholerae strain A1552

41.814

94.976

0.397
  pilC Vibrio campbellii strain DS40M4

39.951

97.608

0.39

Multiple sequence alignment