Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACCP85_RS16240 Genome accession   NZ_CP167198
Coordinates   3753648..3753767 (-) Length   39 a.a.
NCBI ID   WP_136732873.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. ricini strain NCPPB 535     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3748648..3758767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP85_RS16225 (ACCP85_16225) sucC 3748684..3749853 (-) 1170 WP_372168063.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCP85_RS16230 (ACCP85_16230) - 3750085..3751698 (+) 1614 WP_011348336.1 PAS domain-containing sensor histidine kinase -
  ACCP85_RS16235 (ACCP85_16235) pilR 3751965..3753419 (+) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP85_RS16240 (ACCP85_16240) pilB 3753648..3753767 (-) 120 WP_136732873.1 pilus assembly protein Machinery gene
  ACCP85_RS16245 (ACCP85_16245) pilB 3754045..3755778 (-) 1734 WP_372168064.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP85_RS16250 (ACCP85_16250) pilA2 3755916..3756344 (-) 429 WP_039587436.1 pilin Machinery gene
  ACCP85_RS16255 (ACCP85_16255) pilC 3756689..3757951 (+) 1263 WP_078515376.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4166.87 Da        Isoelectric Point: 11.0375

>NTDB_id=1038817 ACCP85_RS16240 WP_136732873.1 3753648..3753767(-) (pilB) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
MKIASATQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1038817 ACCP85_RS16240 WP_136732873.1 3753648..3753767(-) (pilB) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
ATGAAGATCGCCAGCGCCACGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCCTTGATGAAGGCTGCCCACGGGGT
GACCAGCCTGGCCGAGATCAATCGGGTGACCAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Acinetobacter baylyi ADP1

48.718

100

0.487

Multiple sequence alignment