Detailed information NTG1038818

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: ACCP85_RS16245
• Genome accession: NZ_CP167198
• Coordinates: 3754045..3755778 (-)
• Length: 577 a.a.
• NCBI ID: WP_372168064.1
• Uniprot ID: -
• Organism: Xanthomonas axonopodis pv. ricini strain NCPPB 535
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3756689..3765347	3754045..3755778	flank	911

Gene organization within MGE regions

Location: 3754045..3765347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCP85_RS16245 (ACCP85_16245)	pilB	3754045..3755778 (-)	1734	WP_372168064.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACCP85_RS16250 (ACCP85_16250)	pilA2	3755916..3756344 (-)	429	WP_039587436.1	pilin	Machinery gene
ACCP85_RS16255 (ACCP85_16255)	pilC	3756689..3757951 (+)	1263	WP_078515376.1	type II secretion system F family protein	Machinery gene
ACCP85_RS16260 (ACCP85_16260)	-	3757958..3758821 (+)	864	WP_003491180.1	A24 family peptidase	-
ACCP85_RS16265 (ACCP85_16265)	coaE	3758835..3759446 (+)	612	WP_277572157.1	dephospho-CoA kinase	-
ACCP85_RS16275 (ACCP85_16275)	-	3761304..3765347 (+)	4044	WP_372168065.1	RHS repeat-associated core domain-containing protein	-

Sequence

Protein

• Length: 577 a.a.
• Molecular weight: 62446.51 Da
• Isoelectric Point: 5.5986

>NTDB_id=1038818 ACCP85_RS16245 WP_372168064.1 3754045..3755778(-) (pilB) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
MSAVAANLVGITGIARRLVQDGALDEASARVAMDQAAQAKVPLPQWFAEKKLVSAAQLAAANAVEFGMPLLDVSAFDASQ
NAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASLGSSLGN
DDDEMGDLDVSTGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPV
KLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIEKLGYEADQQKL
FLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPD
IIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPD
NALLAEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALMK
AAHGVTSLAEINRVTKD

Nucleotide

• Length: 1734 bp

>NTDB_id=1038818 ACCP85_RS16245 WP_372168064.1 3754045..3755778(-) (pilB) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
ATGAGCGCAGTTGCTGCGAACTTAGTAGGAATCACAGGTATCGCGCGCCGCTTGGTGCAGGACGGGGCGCTGGACGAGGC
AAGTGCTCGTGTTGCCATGGATCAGGCCGCTCAGGCTAAGGTCCCGCTGCCGCAGTGGTTCGCTGAAAAGAAGCTTGTGT
CGGCGGCGCAGCTAGCTGCAGCGAATGCTGTCGAGTTTGGCATGCCACTGCTCGATGTTTCCGCATTCGACGCCAGCCAG
AACGCAGTAAAGCTCGTCAGTGAGGAGTTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTT
CGTGGGGGTGAGCAACCCGACCCAGACCCGTGCGCTGGACGACATCAAGTTCCATACGAACTTGGTGGTCGAAGCCATTC
TTGTCGACGAGGATCAGATCCGTCGGACGCTCGAACAGTGGCAGGCCAGCAACGCGTCGTTGGGTTCGTCGCTTGGCAAC
GACGACGATGAGATGGGGGATCTGGACGTCTCCACCGGCGACGAGGACATGGGTGCCGGCGGGGATTCCGGGGTCGATGC
CAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCCTCGGACATCC
ATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGCATCGACGGCTTGTTGAAGAACGTGGCCAAGGCGCCGGTG
AAGCTGAACCAGCGCATTGCGGCGCGCCTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGACGG
GCGTATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTTCGTGTCAGCACCTTGCCGACCCTGTTCGGTGAAAAGG
TGGTGTTGCGTATCCTGGACGGCAGCGCGGCCAAGCTGGGCATCGAGAAGCTGGGCTACGAGGCGGACCAGCAGAAGCTG
TTCCTGGAGGCGATCCACAAGCCCTACGGGATGGTGCTGGTGACCGGGCCGACCGGTTCGGGCAAGACGGTGTCGTTGTA
TACGGCGCTGGGCATCCTCAACGACGAGACACGCAATATCTCCACCGCGGAGGACCCGGTCGAAATCCGCCTGCCTGGCG
TCAATCAGGTACAGCAGAACAACAAGCGTGGCATGACCTTTGCAGCAGCGCTGCGCTCGTTCCTGCGTCAGGACCCTGAC
ATCATCATGGTTGGCGAAATCCGTGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCACATGGTGTT
GTCGACGTTGCACACCAACGATGCGCCGCAGACCATCGCACGCTTGATGAACATGGGCATCGCGCCCTACAACATTACCT
CGTCGGTGACCTTGGTGATCGCGCAGCGTCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCTGAC
AACGCATTGCTGGCCGAAGGATTCACCCCCGCACAGCTTGCTGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGACGA
GTGCACCGAAGGCTACAAGGGGCGTACGGGTATCTACCAGGTCATGCCGATGACCGACGAGATCGGCGCGATCGTGCTGG
AGGGCGGCAATGCGATGCAGATTGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCCTTGATGAAG
GCTGCCCACGGGGTGACCAGCCTGGCCGAGATCAATCGTGTGACGAAGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (200-467)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (48-152)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baumannii D1279779	55.986	98.44	0.551
pilB	Acinetobacter baylyi ADP1	55.282	98.44	0.544
pilB	Legionella pneumophila strain ERS1305867	52.34	100	0.523
pilF	Neisseria gonorrhoeae MS11	49.12	98.44	0.484
pilB	Vibrio cholerae strain A1552	48.174	99.653	0.48
pilB	Vibrio campbellii strain DS40M4	45.167	98.614	0.445
pilB	Vibrio parahaemolyticus RIMD 2210633	45.567	97.747	0.445
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.171	92.028	0.36