Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCP85_RS16235 Genome accession   NZ_CP167198
Coordinates   3751965..3753419 (+) Length   484 a.a.
NCBI ID   WP_011348337.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. ricini strain NCPPB 535     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746965..3758419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP85_RS16215 (ACCP85_16215) - 3747269..3747613 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  ACCP85_RS16220 (ACCP85_16220) sucD 3747784..3748659 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCP85_RS16225 (ACCP85_16225) sucC 3748684..3749853 (-) 1170 WP_372168063.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCP85_RS16230 (ACCP85_16230) - 3750085..3751698 (+) 1614 WP_011348336.1 PAS domain-containing sensor histidine kinase -
  ACCP85_RS16235 (ACCP85_16235) pilR 3751965..3753419 (+) 1455 WP_011348337.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP85_RS16240 (ACCP85_16240) pilB 3753648..3753767 (-) 120 WP_136732873.1 pilus assembly protein Machinery gene
  ACCP85_RS16245 (ACCP85_16245) pilB 3754045..3755778 (-) 1734 WP_372168064.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP85_RS16250 (ACCP85_16250) pilA2 3755916..3756344 (-) 429 WP_039587436.1 pilin Machinery gene
  ACCP85_RS16255 (ACCP85_16255) pilC 3756689..3757951 (+) 1263 WP_078515376.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52491.26 Da        Isoelectric Point: 6.8289

>NTDB_id=1038816 ACCP85_RS16235 WP_011348337.1 3751965..3753419(+) (pilR) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1038816 ACCP85_RS16235 WP_011348337.1 3751965..3753419(+) (pilR) [Xanthomonas axonopodis pv. ricini strain NCPPB 535]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACACCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATTGAGCTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCCTTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGTGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment