Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ACB363_RS08440 Genome accession   NZ_CP167021
Coordinates   1643182..1643733 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638182..1648733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB363_RS08405 (ACB363_08405) rsfS 1638763..1639116 (-) 354 WP_371400237.1 ribosome silencing factor -
  ACB363_RS08410 (ACB363_08410) - 1639118..1639378 (-) 261 WP_011528257.1 isochorismatase family protein -
  ACB363_RS08415 (ACB363_08415) yqeK 1639354..1639947 (-) 594 WP_003055753.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACB363_RS08420 (ACB363_08420) - 1639944..1640576 (-) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  ACB363_RS08425 (ACB363_08425) yhbY 1640645..1640953 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  ACB363_RS08430 (ACB363_08430) yqeH 1640978..1642096 (-) 1119 WP_011528256.1 ribosome biogenesis GTPase YqeH -
  ACB363_RS08435 (ACB363_08435) - 1642096..1642623 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  ACB363_RS08440 (ACB363_08440) comX/sigX/comX2/sigX2 1643182..1643733 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1037933 ACB363_RS08440 WP_010921894.1 1643182..1643733(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 5]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1037933 ACB363_RS08440 WP_010921894.1 1643182..1643733(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 5]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.