Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ACB340_RS08245 Genome accession   NZ_CP167005
Coordinates   1628210..1628761 (-) Length   183 a.a.
NCBI ID   WP_115224533.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 27     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623210..1633761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB340_RS08220 (ACB340_08220) - 1624578..1625423 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  ACB340_RS08225 (ACB340_08225) - 1625488..1626048 (-) 561 WP_014407836.1 TIGR01440 family protein -
  ACB340_RS08230 (ACB340_08230) - 1626062..1626532 (-) 471 WP_002988139.1 ECF transporter S component -
  ACB340_RS08235 (ACB340_08235) - 1626522..1627286 (-) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACB340_RS08240 (ACB340_08240) truA 1627276..1628025 (-) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  ACB340_RS08245 (ACB340_08245) comX/sigX/comX2/sigX2 1628210..1628761 (-) 552 WP_115224533.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22215.98 Da        Isoelectric Point: 9.8369

>NTDB_id=1037113 ACB340_RS08245 WP_115224533.1 1628210..1628761(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 27]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEETGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
CFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1037113 ACB340_RS08245 WP_115224533.1 1628210..1628761(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 27]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGACAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
TGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.