Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   ACB348_RS01575 Genome accession   NZ_CP167002
Coordinates   285201..285752 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 30     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 280201..290752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB348_RS01575 (ACB348_01575) comX/sigX/comX2/sigX2 285201..285752 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACB348_RS01580 (ACB348_01580) truA 285939..286688 (+) 750 WP_002995162.1 tRNA pseudouridine(38-40) synthase TruA -
  ACB348_RS01585 (ACB348_01585) - 286678..287427 (+) 750 WP_136076198.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACB348_RS01590 (ACB348_01590) - 287432..287902 (+) 471 WP_002988139.1 ECF transporter S component -
  ACB348_RS01595 (ACB348_01595) - 287916..288476 (+) 561 WP_002995157.1 TIGR01440 family protein -
  ACB348_RS01600 (ACB348_01600) - 288541..289386 (-) 846 WP_002982833.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=1036913 ACB348_RS01575 WP_010921894.1 285201..285752(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 30]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1036913 ACB348_RS01575 WP_010921894.1 285201..285752(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain Isolate 30]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.