Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AB8617_RS11480 | Genome accession | NZ_CP166995 |
| Coordinates | 2512530..2513756 (+) | Length | 408 a.a. |
| NCBI ID | WP_290041136.1 | Uniprot ID | - |
| Organism | Psychromonas sp. GE-S-Ul-11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2507530..2518756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8617_RS11465 (AB8617_11460) | nhaD | 2508125..2509567 (+) | 1443 | WP_409438984.1 | sodium:proton antiporter NhaD | - |
| AB8617_RS11470 (AB8617_11465) | - | 2510264..2510686 (+) | 423 | WP_409438985.1 | pilin | - |
| AB8617_RS11475 (AB8617_11470) | pilB | 2510693..2512378 (+) | 1686 | WP_409438986.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AB8617_RS11480 (AB8617_11475) | pilC | 2512530..2513756 (+) | 1227 | WP_290041136.1 | type II secretion system F family protein | Machinery gene |
| AB8617_RS11485 (AB8617_11480) | - | 2514290..2515204 (-) | 915 | WP_409438987.1 | LysR family transcriptional regulator | - |
| AB8617_RS11490 (AB8617_11485) | - | 2515506..2516489 (+) | 984 | WP_290041134.1 | TRAP transporter substrate-binding protein | - |
| AB8617_RS11495 (AB8617_11490) | - | 2516575..2517075 (+) | 501 | WP_409438988.1 | TRAP transporter small permease | - |
| AB8617_RS11500 (AB8617_11495) | - | 2517136..2518410 (+) | 1275 | WP_409438989.1 | TRAP transporter large permease | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44396.94 Da Isoelectric Point: 7.9771
>NTDB_id=1036653 AB8617_RS11480 WP_290041136.1 2512530..2513756(+) (pilC) [Psychromonas sp. GE-S-Ul-11]
MANNNTVIELNTFTWNGINRKGSKVSGELQGASQNEVKVELRKQGVSVTRIKKKPKPLLSFGDKVTPMDIAIVSRQIATM
LNAGVPLVQSLELIAKSNEKSSLRKLMTSIGNEVATGTPLSQTLRSYPRHFDDLYCDLVEAGEQSGSLDTIYDRIATYKE
KSEALKSKIKKAMFYPAAVLIVAFVVTMLLLLFVIPQFQDIFSGFGAELPAFTLFVLGISDIVQNYWYMIFGAIILAVFL
FKRAHRGSEKVRNNTDKFVLKIPIISTILDKAAVARFARTLSTTSAAGIPLVDALLSAAGASGNYVYRSAVHAMRTEVMA
GMQINVAMKTTDAFPDMVSQMVMIGEESGDLDGMLAKVADIYEQQVDDAVDGLTSLLEPMIMVVLGVVVGGLIVAMYLPI
FELGSVIG
MANNNTVIELNTFTWNGINRKGSKVSGELQGASQNEVKVELRKQGVSVTRIKKKPKPLLSFGDKVTPMDIAIVSRQIATM
LNAGVPLVQSLELIAKSNEKSSLRKLMTSIGNEVATGTPLSQTLRSYPRHFDDLYCDLVEAGEQSGSLDTIYDRIATYKE
KSEALKSKIKKAMFYPAAVLIVAFVVTMLLLLFVIPQFQDIFSGFGAELPAFTLFVLGISDIVQNYWYMIFGAIILAVFL
FKRAHRGSEKVRNNTDKFVLKIPIISTILDKAAVARFARTLSTTSAAGIPLVDALLSAAGASGNYVYRSAVHAMRTEVMA
GMQINVAMKTTDAFPDMVSQMVMIGEESGDLDGMLAKVADIYEQQVDDAVDGLTSLLEPMIMVVLGVVVGGLIVAMYLPI
FELGSVIG
Nucleotide
Download Length: 1227 bp
>NTDB_id=1036653 AB8617_RS11480 WP_290041136.1 2512530..2513756(+) (pilC) [Psychromonas sp. GE-S-Ul-11]
ATGGCCAATAACAACACTGTAATAGAGCTAAATACCTTCACTTGGAACGGTATTAATAGGAAAGGATCTAAAGTTTCAGG
TGAGTTGCAGGGCGCTAGTCAAAATGAGGTAAAGGTAGAATTACGCAAACAAGGGGTTAGCGTTACTCGTATCAAAAAGA
AACCTAAACCGCTTTTATCCTTTGGCGATAAAGTGACACCCATGGATATTGCCATTGTTTCTCGTCAAATCGCTACCATG
TTAAATGCCGGTGTACCCTTGGTGCAAAGCTTGGAGTTAATTGCTAAAAGTAATGAAAAATCATCTCTTCGTAAGTTAAT
GACCTCGATAGGTAATGAAGTAGCCACTGGTACGCCCTTATCTCAAACCTTACGTTCATACCCTAGACACTTCGATGATT
TGTATTGTGATTTAGTTGAAGCGGGTGAACAGTCGGGCTCCTTAGATACCATTTATGACCGAATTGCGACTTATAAAGAG
AAGTCCGAAGCCTTAAAATCAAAAATTAAAAAAGCGATGTTTTATCCTGCTGCAGTTTTAATTGTTGCCTTTGTCGTCAC
CATGCTACTGCTGTTGTTTGTTATTCCACAGTTCCAAGATATCTTTTCAGGGTTTGGCGCGGAGTTACCTGCTTTTACTC
TATTTGTATTAGGTATTTCAGATATTGTACAAAATTATTGGTATATGATATTCGGCGCTATTATTCTTGCTGTATTTTTA
TTTAAAAGAGCGCATCGAGGTAGTGAGAAAGTCCGTAATAATACCGATAAATTTGTCTTAAAAATTCCTATTATTAGTAC
TATTCTAGATAAAGCGGCCGTAGCGCGTTTTGCGCGTACTTTATCGACCACTTCTGCTGCAGGTATTCCGCTAGTCGATG
CTTTATTATCAGCCGCGGGTGCCTCTGGTAACTATGTTTACCGAAGCGCTGTGCATGCTATGCGCACTGAAGTAATGGCG
GGTATGCAAATCAACGTAGCAATGAAAACCACTGATGCTTTCCCAGATATGGTCTCACAAATGGTGATGATCGGTGAAGA
ATCGGGTGATTTAGATGGTATGTTAGCAAAAGTAGCTGATATCTATGAGCAGCAAGTTGATGATGCTGTAGATGGTTTAA
CCAGTCTATTAGAGCCTATGATTATGGTGGTATTAGGTGTTGTTGTTGGTGGTTTGATTGTAGCCATGTACTTACCTATA
TTTGAACTTGGTAGTGTTATTGGTTAA
ATGGCCAATAACAACACTGTAATAGAGCTAAATACCTTCACTTGGAACGGTATTAATAGGAAAGGATCTAAAGTTTCAGG
TGAGTTGCAGGGCGCTAGTCAAAATGAGGTAAAGGTAGAATTACGCAAACAAGGGGTTAGCGTTACTCGTATCAAAAAGA
AACCTAAACCGCTTTTATCCTTTGGCGATAAAGTGACACCCATGGATATTGCCATTGTTTCTCGTCAAATCGCTACCATG
TTAAATGCCGGTGTACCCTTGGTGCAAAGCTTGGAGTTAATTGCTAAAAGTAATGAAAAATCATCTCTTCGTAAGTTAAT
GACCTCGATAGGTAATGAAGTAGCCACTGGTACGCCCTTATCTCAAACCTTACGTTCATACCCTAGACACTTCGATGATT
TGTATTGTGATTTAGTTGAAGCGGGTGAACAGTCGGGCTCCTTAGATACCATTTATGACCGAATTGCGACTTATAAAGAG
AAGTCCGAAGCCTTAAAATCAAAAATTAAAAAAGCGATGTTTTATCCTGCTGCAGTTTTAATTGTTGCCTTTGTCGTCAC
CATGCTACTGCTGTTGTTTGTTATTCCACAGTTCCAAGATATCTTTTCAGGGTTTGGCGCGGAGTTACCTGCTTTTACTC
TATTTGTATTAGGTATTTCAGATATTGTACAAAATTATTGGTATATGATATTCGGCGCTATTATTCTTGCTGTATTTTTA
TTTAAAAGAGCGCATCGAGGTAGTGAGAAAGTCCGTAATAATACCGATAAATTTGTCTTAAAAATTCCTATTATTAGTAC
TATTCTAGATAAAGCGGCCGTAGCGCGTTTTGCGCGTACTTTATCGACCACTTCTGCTGCAGGTATTCCGCTAGTCGATG
CTTTATTATCAGCCGCGGGTGCCTCTGGTAACTATGTTTACCGAAGCGCTGTGCATGCTATGCGCACTGAAGTAATGGCG
GGTATGCAAATCAACGTAGCAATGAAAACCACTGATGCTTTCCCAGATATGGTCTCACAAATGGTGATGATCGGTGAAGA
ATCGGGTGATTTAGATGGTATGTTAGCAAAAGTAGCTGATATCTATGAGCAGCAAGTTGATGATGCTGTAGATGGTTTAA
CCAGTCTATTAGAGCCTATGATTATGGTGGTATTAGGTGTTGTTGTTGGTGGTTTGATTGTAGCCATGTACTTACCTATA
TTTGAACTTGGTAGTGTTATTGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57 |
98.039 |
0.559 |
| pilC | Acinetobacter baumannii D1279779 |
52.5 |
98.039 |
0.515 |
| pilC | Acinetobacter baylyi ADP1 |
50.122 |
100 |
0.502 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.378 |
97.794 |
0.502 |
| pilC | Vibrio cholerae strain A1552 |
48.01 |
98.529 |
0.473 |
| pilC | Vibrio campbellii strain DS40M4 |
44.389 |
98.284 |
0.436 |
| pilG | Neisseria meningitidis 44/76-A |
39.85 |
97.794 |
0.39 |
| pilG | Neisseria gonorrhoeae MS11 |
39.599 |
97.794 |
0.387 |