Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AB9V62_RS02315 Genome accession   NZ_CP166923
Coordinates   493135..495255 (+) Length   706 a.a.
NCBI ID   WP_206408431.1    Uniprot ID   -
Organism   Pseudomonas oleovorans strain ERA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488135..500255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9V62_RS02295 (AB9V62_02295) pilM 490302..491366 (+) 1065 WP_074855141.1 pilus assembly protein PilM Machinery gene
  AB9V62_RS02300 (AB9V62_02300) pilN 491366..491938 (+) 573 WP_003459024.1 type 4a pilus biogenesis protein PilN -
  AB9V62_RS02305 (AB9V62_02305) pilO 491935..492558 (+) 624 WP_003459026.1 type 4a pilus biogenesis protein PilO -
  AB9V62_RS02310 (AB9V62_02310) pilP 492555..493079 (+) 525 WP_104730118.1 type 4a pilus biogenesis lipoprotein PilP -
  AB9V62_RS02315 (AB9V62_02315) pilQ 493135..495255 (+) 2121 WP_206408431.1 type IV pilus secretin PilQ Machinery gene
  AB9V62_RS02320 (AB9V62_02320) aroK 495261..495779 (+) 519 WP_084341405.1 shikimate kinase AroK -
  AB9V62_RS02325 (AB9V62_02325) aroB 495831..496934 (+) 1104 WP_206408432.1 3-dehydroquinate synthase -
  AB9V62_RS02330 (AB9V62_02330) - 496945..498498 (+) 1554 WP_084341407.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 76322.52 Da        Isoelectric Point: 4.7386

>NTDB_id=1036248 AB9V62_RS02315 WP_206408431.1 493135..495255(+) (pilQ) [Pseudomonas oleovorans strain ERA]
MNSSLSRLSVALLAALLSPAVLAANLQDLNVASLPGDRVELKLSFDEPVTAPRGYTIEQPARIALDLPGVSNKLGSKNRE
LGVGNARSITIVEAKDRTRLIVNLTSLAPYSTRVEGNDLYVLVGDSSAVASRPSASVPASVAAVAPKKAYGPQAKAISNI
DFQRGEQGEGNVVITLSDASISPDIQEQGGKIRLDFAKTDLPESLRVRLDVKDFATPVQFVSATGSAEKTSIVIEPVGLY
DYLAYQTENKLTLSVKPLSQDDVERRNAERFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVAGNITLRLQNVP
WDQALDLVLKTKGLDKRQIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKATDMAKLFQSVTSADGTP
DSRGSITVDDRTNSIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKALGVRWGGSVRNGRWDVSGKDGVQ
GFDEDTGGRSLFVGTDTVGNTTLEDGLARLPFVDMGVQNSTSGIAIGYLGSNVVLDLQLSAMEKTGNGEIVSQPKVVTSD
KETAKILKGQEVPYQEASSSGATTTSFKEAALALEVTPQITPDNRIIMEVKVTKDAPDFANLVNGVPPLNKNEVNAKVLV
NDGETIVIGGVFSNTQTSAVEKVPFLGDLPFLGRVFRRDIIRDNKAELLVFITPRIMNNQAIAVNR

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=1036248 AB9V62_RS02315 WP_206408431.1 493135..495255(+) (pilQ) [Pseudomonas oleovorans strain ERA]
ATGAACAGCTCTCTTTCGCGTCTTAGCGTCGCTCTGCTGGCGGCGCTGCTGTCGCCCGCGGTATTGGCGGCCAATCTTCA
GGATTTGAATGTCGCCAGTTTGCCTGGTGATCGAGTTGAGCTGAAGCTCTCCTTCGATGAGCCGGTAACGGCTCCTCGCG
GCTATACCATCGAGCAACCCGCGCGAATCGCTCTGGACCTGCCGGGCGTGTCGAACAAGCTCGGTTCCAAGAATCGTGAA
CTGGGTGTCGGTAATGCGCGTAGCATTACCATTGTCGAGGCCAAGGACCGTACCCGTCTGATTGTCAATCTCACCAGTCT
GGCGCCATACAGCACTCGAGTTGAGGGTAATGATCTGTATGTCTTGGTTGGAGATTCTTCTGCCGTCGCGTCGCGGCCCT
CAGCCTCGGTGCCTGCTTCGGTAGCGGCGGTTGCACCCAAGAAAGCCTACGGGCCGCAAGCGAAAGCAATCAGTAATATC
GACTTTCAGCGTGGGGAGCAGGGTGAGGGTAATGTCGTCATTACCCTTTCCGATGCATCGATCAGTCCTGATATCCAAGA
GCAGGGTGGGAAGATTCGTCTGGACTTCGCCAAGACTGACCTGCCCGAGTCGCTGCGTGTACGGCTGGATGTGAAAGATT
TCGCGACGCCCGTGCAGTTCGTTAGTGCCACGGGTAGCGCAGAAAAGACCAGTATCGTGATCGAACCAGTCGGCTTATAC
GATTATCTGGCTTACCAGACCGAGAACAAGCTGACTTTGAGTGTAAAGCCGCTTAGCCAGGACGATGTCGAACGTCGTAA
TGCTGAGCGATTCGCCTATACCGGTGAGAAGCTATCGCTCAATTTTCAGGACATCGATGTGCGTTCTGTCCTGCAATTGA
TCGCCGATTTTACCGATCTGAATCTGGTGGCGAGTGACACTGTCGCTGGCAATATCACTCTGCGTTTGCAGAACGTGCCA
TGGGATCAGGCGCTGGACCTTGTGTTGAAGACCAAAGGCCTGGATAAGCGCCAGATTGGTAACGTCTTGCTGGTGGCTCC
GGCAGACGAGATAGCTGCTCGTGAGCGGCAGGAGCTCGAGTCGCAGAAGCAGATTGCCGAGCTGGCTCCTCTTCGTCGCG
AGCTGATCCAAGTGAACTACGCCAAGGCCACCGATATGGCCAAGCTCTTTCAGTCGGTCACCAGCGCCGACGGTACACCT
GATAGCCGTGGCTCCATCACCGTCGATGATCGTACCAACAGCATTATCGCGTACCAGACTCAGGAGCGACTGGACGAGTT
GCGTCGTATCGTTGCTCAACTCGATATCCCGGTCAGGCAGGTCATGATCGAGGCGCGTATCGTTGAGGCCAACGTCGATT
ATGACAAGGCTCTTGGCGTGCGCTGGGGGGGGTCGGTGCGTAATGGTCGATGGGATGTCAGTGGCAAGGATGGAGTGCAG
GGATTCGATGAGGATACGGGGGGCAGGTCGCTATTCGTTGGCACCGATACAGTCGGTAACACTACCCTAGAAGACGGTTT
GGCTCGTCTTCCCTTTGTGGATATGGGGGTTCAGAACAGCACCTCCGGTATCGCCATTGGTTACCTGGGCAGCAATGTCG
TGCTGGATCTGCAGCTGTCTGCCATGGAGAAAACCGGCAACGGCGAGATCGTATCGCAGCCGAAAGTGGTTACCTCTGAC
AAGGAAACGGCAAAGATCTTGAAAGGGCAGGAGGTTCCTTATCAGGAGGCCAGTTCGAGTGGCGCGACCACTACGTCATT
CAAAGAGGCTGCGTTGGCTCTGGAAGTCACTCCGCAGATCACTCCGGATAATCGCATCATCATGGAAGTCAAGGTCACGA
AAGATGCTCCTGATTTCGCAAATCTGGTCAACGGTGTCCCTCCGCTCAACAAGAACGAGGTCAACGCCAAGGTGTTGGTC
AATGATGGTGAAACCATCGTCATCGGGGGCGTGTTCTCCAATACCCAGACGAGTGCCGTCGAGAAAGTACCATTTTTGGG
TGATCTGCCGTTCTTGGGGCGTGTGTTCCGTCGAGATATCATTCGGGACAACAAAGCTGAGTTGCTGGTTTTCATCACTC
CGCGCATCATGAACAACCAAGCCATTGCCGTGAATCGATGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(301-347)

Bacterial type II and III secretion system protein (Secretin)

(541-697)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-440)

AMIN domain (AMIN)

(37-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

75.559

100

0.766
  pilQ Acinetobacter baumannii strain A118

40.134

100

0.424
  pilQ Acinetobacter baumannii D1279779

40.134

100

0.424
  comQ Acinetobacter baylyi ADP1

42.411

99.858

0.424
  pilQ Legionella pneumophila strain ERS1305867

37.83

96.601

0.365
  pilQ Legionella pneumophila strain Lp02

37.83

96.601

0.365

Multiple sequence alignment