Detailed information NTG1036169

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACA165_RS16420
• Genome accession: NZ_CP166917
• Coordinates: 3567297..3568556 (+)
• Length: 419 a.a.
• NCBI ID: WP_011408067.1
• Uniprot ID: A0A0K0GIM7
• Organism: Xanthomonas oryzae pv. oryzae strain A3857I10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3564153..3573172	3567297..3568556	within	0

Gene organization within MGE regions

Location: 3564153..3573172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA165_RS16405 (ACA165_16410)	-	3564153..3564782 (-)	630	WP_011408070.1	hypothetical protein	-
ACA165_RS16410 (ACA165_16415)	-	3564793..3566382 (-)	1590	WP_011408069.1	phosphoethanolamine transferase	-
ACA165_RS16415 (ACA165_16420)	pilA2	3566517..3566942 (-)	426	WP_011408068.1	pilin	Machinery gene
ACA165_RS16420 (ACA165_16425)	pilC	3567297..3568556 (+)	1260	WP_011408067.1	type II secretion system F family protein	Machinery gene
ACA165_RS16425 (ACA165_16430)	-	3568563..3569426 (+)	864	WP_011258358.1	A24 family peptidase	-
ACA165_RS16430 (ACA165_16435)	coaE	3569440..3570048 (+)	609	WP_011258357.1	dephospho-CoA kinase	-
ACA165_RS16435 (ACA165_16440)	-	3570119..3571438 (+)	1320	WP_275686203.1	IS701-like element ISXo15 family transposase	-
ACA165_RS16440 (ACA165_16445)	-	3571680..3572642 (+)	963	WP_041182297.1	IS1595-like element ISXo2 family transposase	-
ACA165_RS16445 (ACA165_16450)	-	3572867..3573172 (-)	306	Protein_3153	hypothetical protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46058.56 Da
• Isoelectric Point: 10.2301

>NTDB_id=1036169 ACA165_RS16420 WP_011408067.1 3567297..3568556(+) (pilC) [Xanthomonas oryzae pv. oryzae strain A3857I10]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGGAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLIVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=1036169 ACA165_RS16420 WP_011408067.1 3567297..3568556(+) (pilC) [Xanthomonas oryzae pv. oryzae strain A3857I10]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGGGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCTCTGAAGGGCAAGATCAAAAAGGCACTGTTCTACCC
TGCCATGGTGGTTGCAGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATAGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

3D structure

• AlphaFold DB: A0A0K0GIM7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.202	96.897	0.516
pilC	Pseudomonas stutzeri DSM 10701	53.283	94.511	0.504
pilC	Acinetobacter baylyi ADP1	50.37	96.659	0.487
pilC	Acinetobacter baumannii D1279779	50.37	96.659	0.487
pilG	Neisseria gonorrhoeae MS11	43.921	96.181	0.422
pilG	Neisseria meningitidis 44/76-A	43.424	96.181	0.418
pilC	Vibrio cholerae strain A1552	40.75	95.465	0.389
pilC	Vibrio campbellii strain DS40M4	39	95.465	0.372