Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB8599_RS15600 Genome accession   NZ_CP166194
Coordinates   3466913..3468010 (-) Length   365 a.a.
NCBI ID   WP_407331766.1    Uniprot ID   -
Organism   Enterovibrio sp. 27052020O     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3461913..3473010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8599_RS15570 (AB8599_15575) hemF 3462412..3463329 (-) 918 WP_407331760.1 oxygen-dependent coproporphyrinogen oxidase -
  AB8599_RS15575 (AB8599_15580) - 3463357..3463914 (-) 558 WP_407331761.1 Sua5/YciO/YrdC/YwlC family protein -
  AB8599_RS15580 (AB8599_15585) purE 3464144..3464629 (+) 486 WP_407331762.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AB8599_RS15585 (AB8599_15590) - 3464632..3465768 (+) 1137 WP_407331763.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AB8599_RS15590 (AB8599_15595) - 3465830..3466396 (-) 567 WP_407331764.1 type I DNA topoisomerase -
  AB8599_RS15595 (AB8599_15600) - 3466434..3466910 (-) 477 WP_407331765.1 DUF494 family protein -
  AB8599_RS15600 (AB8599_15605) dprA 3466913..3468010 (-) 1098 WP_407331766.1 DNA-processing protein DprA Machinery gene
  AB8599_RS15605 (AB8599_15610) - 3468013..3469047 (-) 1035 WP_407331767.1 LysM peptidoglycan-binding domain-containing protein -
  AB8599_RS15610 (AB8599_15615) def 3469167..3469679 (+) 513 WP_407331768.1 peptide deformylase -
  AB8599_RS15615 (AB8599_15620) fmt 3469687..3470646 (+) 960 WP_407331769.1 methionyl-tRNA formyltransferase -
  AB8599_RS15620 (AB8599_15625) rsmB 3470749..3472026 (+) 1278 WP_407331770.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39270.46 Da        Isoelectric Point: 6.4980

>NTDB_id=1033651 AB8599_RS15600 WP_407331766.1 3466913..3468010(-) (dprA) [Enterovibrio sp. 27052020O]
MNASLESWLRLAAVPRLGGNAVSKIICKHPPEKLIELEDIHLAALGFKPMQIHAFRHPDMSVIDKCMAWCSLPDRHIISL
TDQRYPYLLKQISGAPPLLFVEGKPETLSLPQIAIVGSRDASAEGLALAHEFAHALAQHDVVVTSGLALGIDGRAHRGAL
DAGGNTIAVLGSGLEKVYPSRHRDLAKDITSNGALVSELWPWSPPKPAFFPRRNRIISGLSTGVLVVEAALKSGSLITAR
LALEQGRDVFALPGSIHNPHAKGSNGLIKQGAFLVESVDEILEQVGALAGCAINHQLDVTQDQVLQEELPFPELLANVGN
EVRCVDVLAEICDQPVHEIMMKLLELELLGLVSAVPGGYVRARRG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1033651 AB8599_RS15600 WP_407331766.1 3466913..3468010(-) (dprA) [Enterovibrio sp. 27052020O]
GTGAATGCTTCACTAGAGTCTTGGCTACGGCTGGCTGCCGTGCCAAGGCTGGGCGGCAATGCTGTCAGTAAAATTATCTG
CAAACACCCGCCAGAAAAACTTATTGAACTTGAAGATATTCATTTGGCTGCGTTGGGCTTTAAGCCCATGCAAATTCATG
CATTTCGTCACCCAGACATGTCGGTCATTGATAAGTGCATGGCATGGTGTTCGTTGCCAGATAGGCACATCATCAGCCTT
ACCGATCAGCGTTATCCCTATCTCCTTAAGCAAATCTCCGGTGCACCGCCCCTCTTGTTCGTAGAGGGTAAGCCTGAAAC
CTTGTCGCTTCCCCAGATAGCGATTGTTGGTAGCCGAGATGCTAGCGCTGAAGGGCTAGCATTGGCGCATGAGTTCGCCC
ATGCATTGGCTCAGCATGATGTTGTGGTAACTAGTGGCTTGGCGCTGGGCATCGACGGTCGAGCACATCGTGGCGCTCTC
GATGCGGGTGGGAATACCATTGCAGTATTAGGTTCTGGGCTTGAAAAGGTGTACCCTTCCCGCCATCGTGATCTTGCAAA
AGACATTACGTCAAACGGTGCCTTAGTGTCAGAGTTGTGGCCTTGGTCGCCGCCAAAACCTGCATTTTTTCCGAGAAGAA
ATCGTATTATCAGTGGTCTTTCTACTGGTGTACTGGTTGTTGAGGCGGCACTGAAAAGTGGCTCGTTGATCACTGCACGC
CTTGCTCTTGAGCAAGGTCGTGATGTGTTTGCATTACCTGGATCAATTCACAATCCACATGCTAAAGGCAGTAACGGACT
GATCAAGCAGGGCGCGTTTTTAGTGGAATCTGTTGATGAGATTTTAGAGCAAGTTGGTGCGCTAGCGGGTTGTGCAATTA
ACCACCAGTTAGACGTGACTCAGGATCAAGTTTTGCAAGAAGAATTGCCATTTCCTGAACTGTTGGCTAACGTAGGAAAT
GAAGTAAGGTGTGTCGATGTGCTTGCAGAAATCTGCGATCAACCCGTTCACGAAATCATGATGAAGTTGTTAGAACTAGA
GCTACTGGGGCTGGTATCCGCAGTGCCCGGTGGCTATGTCAGAGCGAGGAGGGGATAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-358)

DNA recombination-mediator protein A (DNA_processg_A)

(75-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.249

99.178

0.548
  dprA Vibrio cholerae strain A1552

51.22

100

0.518
  dprA Glaesserella parasuis strain SC1401

46.9

100

0.477
  dprA Haemophilus influenzae Rd KW20

44.186

94.247

0.416
  dprA Legionella pneumophila strain ERS1305867

41.873

99.452

0.416
  dprA Neisseria meningitidis strain C311

37.532

100

0.4
  dprA Neisseria meningitidis MC58

37.532

100

0.4
  dprA Acinetobacter baylyi ADP1

38.261

94.521

0.362

Multiple sequence alignment