Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   AB6M97_RS10085 Genome accession   NZ_CP163514
Coordinates   2049058..2051028 (-) Length   656 a.a.
NCBI ID   WP_369350711.1    Uniprot ID   -
Organism   Streptococcus hillyeri strain S23-3001-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2044058..2056028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M97_RS10065 (AB6M97_10065) amiF 2044570..2045493 (-) 924 WP_121836457.1 ATP-binding cassette domain-containing protein Regulator
  AB6M97_RS10070 (AB6M97_10070) amiE 2045503..2046555 (-) 1053 WP_121836456.1 ABC transporter ATP-binding protein Regulator
  AB6M97_RS10075 (AB6M97_10075) amiD 2046565..2047491 (-) 927 WP_121836455.1 oligopeptide ABC transporter permease OppC Regulator
  AB6M97_RS10080 (AB6M97_10080) amiC 2047491..2048993 (-) 1503 WP_121836454.1 ABC transporter permease Regulator
  AB6M97_RS10085 (AB6M97_10085) amiA 2049058..2051028 (-) 1971 WP_369350711.1 peptide ABC transporter substrate-binding protein Regulator
  AB6M97_RS10090 (AB6M97_10090) nusB 2051280..2051705 (-) 426 WP_121836452.1 transcription antitermination factor NusB -
  AB6M97_RS10095 (AB6M97_10095) - 2051698..2052087 (-) 390 WP_369350713.1 Asp23/Gls24 family envelope stress response protein -
  AB6M97_RS10100 (AB6M97_10100) efp 2052223..2052780 (-) 558 WP_121836450.1 elongation factor P -
  AB6M97_RS10105 (AB6M97_10105) - 2052923..2054083 (-) 1161 WP_121836465.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71852.98 Da        Isoelectric Point: 4.4445

>NTDB_id=1030374 AB6M97_RS10085 WP_369350711.1 2049058..2051028(-) (amiA) [Streptococcus hillyeri strain S23-3001-1]
MKNKGKLLALAGVTLVSAAVLAACGGNSSAPKSEGASKVYNYVYASDPKSLDYILTNQSATSALITQMVDGLLENDKYGN
LVPSLAEDWKVSEDGLTYTYTLREGVSWYTSDGEEYAPVVAEDFVTGLKHAIDKDSESLYVIQDSIKNLNEYKEGKVKFE
EVGIKALDERTVQYTLNAPEPYWNSKTTYSIMFPVNAKFLESKGKDFGSTDPSSILVNGAYFLSEYTAKTSMSFTKNDAY
WDVDNLTLDEVKLTYFDGEDIGSLYTNFDKGAYNVATLNPNDPTYADAKKKYPDAITYGMQDATTYFASINTNRSNFTNS
KKDAAAQESTKKALLNQDFRQAITFAFDRGSWNAQRAGEDAREKALRSMLTAPTFVSIGEESYGQVVQKELASIGDEWKD
VKLDDAQDGLYNADKAKAEFAKAKEALGSEVTYPIQLDFPVDQADTVAVQRAQSMKQSIEASLGKENVQLNIIELDNDTY
LNSTYYAEDVSQQDYDLTISGWGPDYADPRSYLDIFNVENGANAQKIGVMPGKNQDIAKALGLDTFTADLTAANAIIDDL
DARFTAQAKAEAKLLDQAVVIPLISLGGTPRVSKAVPFSGRYSVSGVKGSDVYKGIKLQEEPVTAKQYDKAKAAWLEEKA
KSNAEAQKALADHVAK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1030374 AB6M97_RS10085 WP_369350711.1 2049058..2051028(-) (amiA) [Streptococcus hillyeri strain S23-3001-1]
ATGAAAAATAAAGGTAAATTATTAGCCCTTGCTGGAGTAACTCTTGTATCAGCAGCAGTGCTTGCAGCTTGTGGAGGAAA
CTCTTCGGCACCTAAATCTGAGGGAGCTTCAAAAGTTTATAACTATGTATATGCATCAGATCCAAAATCTTTGGACTATA
TTTTGACTAACCAATCTGCGACTTCAGCGCTTATAACACAAATGGTTGATGGTCTTTTGGAAAATGATAAATATGGTAAC
TTGGTACCATCTCTTGCAGAAGACTGGAAAGTATCGGAAGATGGTTTGACATATACTTACACATTGCGTGAAGGTGTGTC
ATGGTACACTTCAGATGGTGAAGAGTACGCACCAGTTGTTGCCGAAGACTTTGTAACAGGTCTTAAACACGCGATTGATA
AAGATTCAGAATCACTTTACGTCATCCAAGATTCAATCAAAAATTTGAATGAGTACAAAGAAGGTAAAGTAAAATTTGAA
GAAGTTGGTATCAAAGCCCTTGATGAACGTACCGTTCAGTACACTTTGAACGCTCCAGAACCATACTGGAATTCAAAGAC
AACTTACTCAATCATGTTCCCGGTTAATGCTAAGTTCCTTGAGTCAAAAGGTAAAGATTTTGGTTCAACTGACCCATCAT
CAATCCTTGTCAATGGTGCATATTTCTTAAGTGAATATACAGCTAAAACCTCAATGTCATTTACGAAAAATGATGCTTAC
TGGGATGTAGATAACCTTACTCTTGACGAAGTGAAATTGACATATTTTGATGGTGAAGATATCGGTTCCCTTTATACTAA
CTTTGATAAGGGTGCCTATAACGTAGCGACCCTTAACCCTAACGATCCGACTTATGCGGATGCTAAGAAGAAATATCCGG
ATGCTATCACTTATGGTATGCAGGATGCAACCACTTACTTTGCATCAATCAACACAAATCGTTCTAACTTCACGAATTCT
AAGAAAGATGCAGCTGCTCAAGAGTCAACTAAGAAGGCTCTTCTTAACCAAGATTTCCGTCAAGCAATTACATTTGCCTT
TGACCGTGGTTCATGGAATGCCCAACGTGCGGGTGAAGATGCTAGAGAAAAAGCTCTTCGTAGCATGTTGACAGCACCAA
CATTTGTGTCTATTGGTGAAGAATCTTACGGACAAGTCGTTCAAAAAGAATTAGCATCTATCGGCGATGAATGGAAAGAT
GTTAAATTAGATGATGCGCAAGATGGTCTTTACAATGCTGACAAAGCTAAAGCTGAGTTTGCTAAAGCAAAAGAGGCTCT
TGGCAGCGAGGTCACTTACCCAATCCAACTTGATTTCCCAGTGGACCAAGCAGATACTGTTGCTGTACAACGTGCACAAT
CAATGAAACAATCTATTGAGGCATCACTTGGAAAAGAGAATGTGCAACTTAATATTATTGAACTTGATAATGACACATAC
CTTAACTCAACTTACTATGCTGAGGATGTTTCACAACAAGACTATGACTTGACAATCTCAGGTTGGGGACCAGACTATGC
TGACCCACGTTCATACCTAGACATTTTCAATGTTGAAAATGGAGCAAATGCTCAAAAAATTGGTGTAATGCCAGGTAAGA
ACCAAGATATCGCTAAAGCTCTTGGACTTGATACCTTTACTGCTGATCTTACAGCGGCAAATGCTATTATTGATGATCTT
GATGCTCGTTTTACAGCACAAGCAAAAGCAGAAGCGAAATTACTTGATCAAGCTGTCGTTATTCCACTAATCTCACTTGG
TGGTACACCACGTGTATCTAAAGCAGTACCATTCTCAGGTCGCTACTCTGTATCAGGTGTTAAAGGTTCAGATGTTTATA
AAGGCATCAAGCTCCAAGAAGAGCCTGTAACAGCTAAACAATATGACAAAGCGAAGGCTGCTTGGCTTGAAGAAAAAGCT
AAGTCAAATGCAGAAGCACAGAAAGCTCTTGCAGATCACGTAGCTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(81-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

48.862

100

0.491
  amiA3 Streptococcus thermophilus LMG 18311

48.71

100

0.489
  amiA3 Streptococcus thermophilus LMD-9

48.407

100

0.486

Multiple sequence alignment