Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   AB6M97_RS10080 Genome accession   NZ_CP163514
Coordinates   2047491..2048993 (-) Length   500 a.a.
NCBI ID   WP_121836454.1    Uniprot ID   A0A3L9DPS4
Organism   Streptococcus hillyeri strain S23-3001-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2042491..2053993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M97_RS10060 (AB6M97_10060) - 2043245..2044405 (+) 1161 WP_121836465.1 ISAs1 family transposase -
  AB6M97_RS10065 (AB6M97_10065) amiF 2044570..2045493 (-) 924 WP_121836457.1 ATP-binding cassette domain-containing protein Regulator
  AB6M97_RS10070 (AB6M97_10070) amiE 2045503..2046555 (-) 1053 WP_121836456.1 ABC transporter ATP-binding protein Regulator
  AB6M97_RS10075 (AB6M97_10075) amiD 2046565..2047491 (-) 927 WP_121836455.1 oligopeptide ABC transporter permease OppC Regulator
  AB6M97_RS10080 (AB6M97_10080) amiC 2047491..2048993 (-) 1503 WP_121836454.1 ABC transporter permease Regulator
  AB6M97_RS10085 (AB6M97_10085) amiA 2049058..2051028 (-) 1971 WP_369350711.1 peptide ABC transporter substrate-binding protein Regulator
  AB6M97_RS10090 (AB6M97_10090) nusB 2051280..2051705 (-) 426 WP_121836452.1 transcription antitermination factor NusB -
  AB6M97_RS10095 (AB6M97_10095) - 2051698..2052087 (-) 390 WP_369350713.1 Asp23/Gls24 family envelope stress response protein -
  AB6M97_RS10100 (AB6M97_10100) efp 2052223..2052780 (-) 558 WP_121836450.1 elongation factor P -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56039.01 Da        Isoelectric Point: 9.8781

>NTDB_id=1030373 AB6M97_RS10080 WP_121836454.1 2047491..2048993(-) (amiC) [Streptococcus hillyeri strain S23-3001-1]
MKKYLFTRTLRSLFSIFMVMVVTYTVVYTLVPTRLIFNQDPLYNKMSTTPDKKDNYVNTVFERMGYIQYYNTKELVNKAK
TIDSGVTSEATESNQKIYEEYIASVGNGWELHNFTESGKAYATRKIPIYERLWNFFSNLVVIDHPWKIKDKENPDLERYI
RVENDPAIGWSVVGSGTKHKYLVYVNNQFPYIHQNFITFNLGNSYPTFSGIPVLQVITQGQGKALTQDVTFPTGVTKKSS
VDIYSRTYQNPSKADDIAVANFGKGDNYTATKVRYTDPSMIANSARIGLTGIFIAYVLGLPLGLFMARFKSTWFDSMSTS
LMTFVLAVPSIALIYVIRFVGGHLGLPDNFPLLGASDVRSYLLPSIVLGLLSVPGLAIWFRRYLVDLQNSDWMRFARAKG
LSEGEIYRSHLFKNAMVPVVHGIPGAIVLTIAGATLTETVFIVPGMGKMLIDSIRASNNAMVVGLTFIFTTLSIFSLFAG
DLLMALVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1030373 AB6M97_RS10080 WP_121836454.1 2047491..2048993(-) (amiC) [Streptococcus hillyeri strain S23-3001-1]
ATGAAAAAATATCTCTTTACTCGTACGTTACGATCGTTATTTTCTATTTTTATGGTTATGGTTGTAACTTATACGGTTGT
CTACACACTGGTTCCGACACGACTTATTTTTAACCAAGACCCTTTGTATAATAAGATGTCGACAACACCAGATAAAAAGG
ATAACTATGTCAATACGGTTTTTGAACGTATGGGCTATATCCAGTACTATAATACAAAGGAATTGGTTAATAAGGCTAAA
ACTATAGATTCGGGAGTTACTTCTGAAGCAACTGAGTCTAATCAGAAAATCTACGAAGAATATATCGCTTCTGTAGGAAA
TGGTTGGGAGCTTCATAACTTCACAGAGAGCGGTAAGGCTTATGCCACTCGTAAAATTCCGATTTATGAACGTCTATGGA
ATTTCTTCTCAAACCTTGTTGTGATTGACCATCCTTGGAAAATTAAAGATAAGGAAAATCCAGATTTAGAACGTTATATC
CGTGTTGAAAATGATCCAGCGATTGGCTGGTCAGTTGTTGGCTCTGGTACTAAGCATAAATATCTTGTTTATGTGAATAA
CCAGTTCCCATATATTCATCAAAACTTTATCACTTTTAACCTTGGTAATTCTTATCCGACCTTTAGTGGTATCCCTGTTC
TTCAGGTTATCACACAAGGACAAGGTAAAGCCCTAACTCAAGATGTTACTTTCCCGACAGGAGTAACTAAAAAGTCTTCT
GTTGATATTTATAGCCGCACTTACCAAAATCCTAGCAAGGCAGATGATATAGCTGTTGCAAACTTTGGTAAGGGGGATAA
TTATACTGCTACAAAAGTTCGTTATACTGATCCATCAATGATTGCGAACTCTGCTCGCATTGGTTTGACAGGTATTTTTA
TTGCTTACGTATTAGGTCTACCTCTAGGACTTTTCATGGCTCGTTTCAAGTCAACTTGGTTTGATTCTATGTCTACTTCT
TTGATGACTTTTGTTTTAGCGGTGCCATCGATTGCTTTGATTTATGTTATTCGCTTTGTTGGAGGTCATCTCGGGCTTCC
GGATAATTTCCCATTGTTGGGGGCGTCTGATGTACGTTCATACCTCTTGCCAAGTATTGTATTGGGGCTTTTGAGTGTTC
CAGGACTTGCTATTTGGTTCCGTCGTTATCTAGTGGATTTGCAAAATTCTGATTGGATGCGTTTTGCTCGTGCCAAAGGC
TTATCGGAAGGTGAAATTTATCGTTCACATTTATTTAAAAATGCCATGGTTCCTGTTGTTCATGGCATTCCAGGGGCAAT
CGTGTTGACAATTGCAGGTGCGACACTAACTGAAACAGTATTTATCGTCCCTGGTATGGGTAAAATGTTGATTGATTCTA
TCCGTGCTTCAAATAATGCTATGGTAGTTGGATTGACTTTCATCTTTACTACATTGTCTATCTTCTCACTCTTTGCAGGA
GATTTGTTAATGGCTCTTGTTGACCCACGTATTAAGTTATCGACTAAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L9DPS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62

100

0.62
  amiC Streptococcus thermophilus LMD-9

61.6

100

0.616
  amiC Streptococcus thermophilus LMG 18311

61.6

100

0.616

Multiple sequence alignment