Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   AB6M97_RS10065 Genome accession   NZ_CP163514
Coordinates   2044570..2045493 (-) Length   307 a.a.
NCBI ID   WP_121836457.1    Uniprot ID   A0A3L9DJD0
Organism   Streptococcus hillyeri strain S23-3001-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2037970..2044405 2044570..2045493 flank 165


Gene organization within MGE regions


Location: 2037970..2045493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M97_RS10040 (AB6M97_10040) tadA 2039259..2039744 (-) 486 WP_121836460.1 tRNA adenosine(34) deaminase TadA -
  AB6M97_RS10045 (AB6M97_10045) - 2039738..2040514 (-) 777 Protein_1924 MBL fold metallo-hydrolase -
  AB6M97_RS10050 (AB6M97_10050) - 2040536..2041087 (-) 552 WP_183121699.1 nucleotidyltransferase family protein -
  AB6M97_RS10055 (AB6M97_10055) tkt 2041135..2043108 (-) 1974 WP_121836458.1 transketolase -
  AB6M97_RS10060 (AB6M97_10060) - 2043245..2044405 (+) 1161 WP_121836465.1 ISAs1 family transposase -
  AB6M97_RS10065 (AB6M97_10065) amiF 2044570..2045493 (-) 924 WP_121836457.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34763.95 Da        Isoelectric Point: 6.3167

>NTDB_id=1030370 AB6M97_RS10065 WP_121836457.1 2044570..2045493(-) (amiF) [Streptococcus hillyeri strain S23-3001-1]
MTEKLVEIKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDIIFDGKKINGKLSRS
DKKEVIKRIQMIFQDPAASLNERATVDYIISEGLYNFNLFANEEERQQKVRDMITHVGLLPEHLTRYPHEFSGGQRQRIG
IARALVMQPEFVIADEPISALDVSVRAQVLNLLKQFQRELGLTYLFIAHDLSVVRFISDRIAVIHKGIIVEVAETEELFT
NPIHPYTKSLLSAVPIPDPILERQKELVTYDPEMHDYSVDKPEMVEIKPGHFVWGNKSEMETYRKSL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1030370 AB6M97_RS10065 WP_121836457.1 2044570..2045493(-) (amiF) [Streptococcus hillyeri strain S23-3001-1]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGGAAAAAGAAATTTGTAGCTGTTAAAAA
TGCCAACTTCTTTATCAATAAAGGGGAAACGTTCTCTCTTGTTGGTGAATCAGGTTCAGGAAAAACCACAATTGGACGTG
CCATCATTGGTTTAAACGATACAAGTAGCGGAGATATTATCTTCGATGGTAAAAAAATCAACGGAAAACTTTCTCGTTCT
GATAAAAAAGAAGTGATTAAGCGTATTCAGATGATTTTCCAAGATCCAGCGGCAAGTTTGAATGAACGTGCGACGGTAGA
TTACATCATTTCGGAAGGTCTTTATAACTTTAACCTTTTTGCAAATGAAGAAGAGCGTCAGCAGAAGGTTCGTGACATGA
TTACCCATGTTGGACTTTTACCTGAACACTTAACACGTTATCCACATGAATTCTCGGGTGGACAACGTCAACGTATTGGT
ATTGCACGTGCTTTGGTTATGCAACCTGAGTTTGTTATTGCGGATGAACCAATCTCTGCACTTGATGTATCGGTGCGCGC
GCAGGTTTTGAATCTTCTGAAACAATTCCAGCGTGAGTTAGGTTTGACTTACCTCTTTATCGCTCATGACCTATCGGTGG
TTCGTTTTATTTCTGACCGTATTGCTGTTATCCATAAGGGTATTATTGTCGAAGTGGCTGAAACTGAGGAGTTGTTTACG
AATCCAATTCACCCTTATACAAAATCACTCTTGTCGGCGGTCCCTATTCCAGATCCTATTTTGGAACGTCAAAAAGAATT
GGTTACTTACGACCCAGAAATGCACGATTATTCTGTTGATAAACCAGAAATGGTTGAAATCAAACCAGGACACTTTGTTT
GGGGTAATAAATCAGAAATGGAAACTTACCGTAAATCTTTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L9DJD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

84.59

99.349

0.84
  amiF Streptococcus thermophilus LMD-9

84.262

99.349

0.837
  amiF Streptococcus salivarius strain HSISS4

83.934

99.349

0.834

Multiple sequence alignment