Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   AB6M97_RS10075 Genome accession   NZ_CP163514
Coordinates   2046565..2047491 (-) Length   308 a.a.
NCBI ID   WP_121836455.1    Uniprot ID   -
Organism   Streptococcus hillyeri strain S23-3001-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2041565..2052491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M97_RS10060 (AB6M97_10060) - 2043245..2044405 (+) 1161 WP_121836465.1 ISAs1 family transposase -
  AB6M97_RS10065 (AB6M97_10065) amiF 2044570..2045493 (-) 924 WP_121836457.1 ATP-binding cassette domain-containing protein Regulator
  AB6M97_RS10070 (AB6M97_10070) amiE 2045503..2046555 (-) 1053 WP_121836456.1 ABC transporter ATP-binding protein Regulator
  AB6M97_RS10075 (AB6M97_10075) amiD 2046565..2047491 (-) 927 WP_121836455.1 oligopeptide ABC transporter permease OppC Regulator
  AB6M97_RS10080 (AB6M97_10080) amiC 2047491..2048993 (-) 1503 WP_121836454.1 ABC transporter permease Regulator
  AB6M97_RS10085 (AB6M97_10085) amiA 2049058..2051028 (-) 1971 WP_369350711.1 peptide ABC transporter substrate-binding protein Regulator
  AB6M97_RS10090 (AB6M97_10090) nusB 2051280..2051705 (-) 426 WP_121836452.1 transcription antitermination factor NusB -
  AB6M97_RS10095 (AB6M97_10095) - 2051698..2052087 (-) 390 WP_369350713.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34696.57 Da        Isoelectric Point: 9.6223

>NTDB_id=1030372 AB6M97_RS10075 WP_121836455.1 2046565..2047491(-) (amiD) [Streptococcus hillyeri strain S23-3001-1]
MSTIDKSKFQFVARDDNASEVINTPAYSYWKSVFRQFFAKKSTLPMLIILIAVLLMSFIYPMFSSYDFRDVSDINDFSKR
YIWPNAQYWFGTDKNGQSLFDGVWYGARNSLLISVLATVINMAIGIVVGAFWGVSKSFDKIMLEIYNVISNIPSMLITIV
LTYALGAGFWNLILAFTLTGWIGPAFTMRTQILRYRDLEYNLASQTLGTPPMKIAVKNLLPQLVSIIMTMVSQSLPGYIS
SEAFLSYFGIGLPISTPSLGRLISNYSKYLTNNAYLFWIPLTALVLVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1030372 AB6M97_RS10075 WP_121836455.1 2046565..2047491(-) (amiD) [Streptococcus hillyeri strain S23-3001-1]
ATGTCAACTATTGATAAATCTAAGTTCCAATTTGTGGCTCGTGATGATAATGCCTCCGAGGTTATTAATACACCGGCCTA
TTCTTACTGGAAATCTGTATTTCGACAGTTTTTTGCGAAGAAATCAACATTACCAATGTTGATTATCTTGATTGCAGTTC
TTTTGATGAGTTTTATTTATCCAATGTTTTCTAGCTATGATTTCCGAGATGTTAGTGACATTAATGACTTCTCAAAACGC
TACATTTGGCCAAATGCTCAATATTGGTTTGGTACTGATAAAAATGGTCAGTCACTTTTTGATGGGGTCTGGTATGGTGC
TAGAAACTCGCTCTTGATTTCGGTATTGGCAACGGTTATCAATATGGCTATCGGTATTGTTGTAGGTGCCTTTTGGGGTG
TTTCTAAAAGTTTTGATAAGATTATGCTTGAGATATATAATGTTATCTCAAACATTCCAAGTATGCTGATTACAATTGTT
TTAACCTATGCTTTGGGGGCTGGTTTCTGGAATCTTATTTTAGCCTTCACTTTGACGGGTTGGATTGGACCTGCATTTAC
TATGCGTACTCAAATTTTGCGTTATCGTGACCTTGAATATAACCTTGCCAGTCAGACCTTGGGGACACCTCCTATGAAAA
TTGCGGTGAAAAATCTTTTGCCACAATTGGTATCAATTATCATGACTATGGTTTCTCAAAGTTTACCAGGATATATTTCG
TCTGAGGCTTTCTTGTCTTATTTTGGTATTGGTTTGCCAATTTCAACACCGTCGTTAGGTCGTTTAATTTCAAACTACTC
AAAATACTTGACTAACAATGCCTATTTATTCTGGATTCCACTTACAGCTTTAGTATTGGTGTCCTTACCGCTTTACATTG
TTGGGCAAAACTTGGCGGATGCCAGTGACCCACGTACTCACAGATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

74.675

100

0.747
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment