Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB6M97_RS00970 Genome accession   NZ_CP163514
Coordinates   175191..175694 (+) Length   167 a.a.
NCBI ID   WP_121836169.1    Uniprot ID   A0A3L9DPB9
Organism   Streptococcus hillyeri strain S23-3001-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 170191..180694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M97_RS00945 (AB6M97_00945) - 170563..171015 (+) 453 WP_121835799.1 deaminase -
  AB6M97_RS00950 (AB6M97_00950) - 171766..172926 (+) 1161 WP_121836465.1 ISAs1 family transposase -
  AB6M97_RS00955 (AB6M97_00955) - 173098..173970 (+) 873 WP_121836172.1 ABC transporter ATP-binding protein -
  AB6M97_RS00960 (AB6M97_00960) - 173982..174704 (+) 723 WP_369350954.1 hypothetical protein -
  AB6M97_RS00965 (AB6M97_00965) rpsF 174889..175179 (+) 291 WP_121836170.1 30S ribosomal protein S6 -
  AB6M97_RS00970 (AB6M97_00970) ssb 175191..175694 (+) 504 WP_121836169.1 single-stranded DNA-binding protein Machinery gene
  AB6M97_RS00975 (AB6M97_00975) rpsR 175733..175972 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  AB6M97_RS00980 (AB6M97_00980) - 176566..176805 (+) 240 WP_121836176.1 DNA repair protein -
  AB6M97_RS00985 (AB6M97_00985) lepB 176818..177404 (+) 587 Protein_169 signal peptidase I -
  AB6M97_RS00990 (AB6M97_00990) - 177472..179280 (+) 1809 WP_369350964.1 InlB B-repeat-containing protein -
  AB6M97_RS00995 (AB6M97_00995) - 179310..180446 (+) 1137 WP_369350966.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18321.20 Da        Isoelectric Point: 4.9268

>NTDB_id=1030333 AB6M97_RS00970 WP_121836169.1 175191..175694(+) (ssb) [Streptococcus hillyeri strain S23-3001-1]
MINNVVLVGRMTRDAELRYTPNQVAVATFTLAVNRIRKNQNGEREADFINCVIWNQPAEHLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGNAGSSYNAGGFDSFGGAPTGGGFTSQPSQSTPNFGRDESPFGNANPMDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1030333 AB6M97_RS00970 WP_121836169.1 175191..175694(+) (ssb) [Streptococcus hillyeri strain S23-3001-1]
ATGATTAATAATGTAGTACTTGTGGGTCGTATGACTCGTGATGCAGAACTTCGTTACACTCCAAATCAGGTGGCTGTAGC
AACTTTTACCCTGGCTGTTAACCGTATTCGTAAAAACCAAAATGGTGAGCGTGAGGCGGACTTCATCAACTGTGTCATCT
GGAATCAACCAGCTGAACACTTGGCGAACTGGGCTAAAAAAGGAGCTTTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGTCAGCGCGTTTACGTAACAGAAGTTGTTGCTGAAAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTAATGCTGGTAGCTCTTATAATGCAGGTGGATTTGATTCATTTGGTGGAGCACCAACAGGTGGAGGTT
TTACTTCTCAACCATCACAATCAACACCAAATTTCGGTCGAGATGAAAGCCCATTTGGTAACGCAAATCCAATGGACATT
TCAGACGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L9DPB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.803

100

0.599
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.587
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.846

70.06

0.377
  ssbB/cilA Streptococcus mitis NCTC 12261

52.991

70.06

0.371
  ssbB/cilA Streptococcus pneumoniae Rx1

52.991

70.06

0.371
  ssbB/cilA Streptococcus pneumoniae D39

52.991

70.06

0.371
  ssbB/cilA Streptococcus pneumoniae R6

52.991

70.06

0.371
  ssbB/cilA Streptococcus mitis SK321

52.991

70.06

0.371

Multiple sequence alignment