Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   AB4X21_RS02575 Genome accession   NZ_CP163380
Coordinates   481621..483606 (+) Length   661 a.a.
NCBI ID   WP_155127073.1    Uniprot ID   A0A6A8V7E1
Organism   Streptococcus sp. CP1998     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 476621..488606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS02555 (AB4X21_02555) - 477023..478249 (+) 1227 WP_369088138.1 cysteine desulfurase -
  AB4X21_RS02560 (AB4X21_02560) sufU 478236..478670 (+) 435 WP_003004754.1 Fe-S cluster assembly sulfur transfer protein SufU -
  AB4X21_RS02565 (AB4X21_02565) sufB 478703..480115 (+) 1413 WP_003010279.1 Fe-S cluster assembly protein SufB -
  AB4X21_RS02570 (AB4X21_02570) - 480174..481415 (-) 1242 WP_320910915.1 serine hydrolase -
  AB4X21_RS02575 (AB4X21_02575) amiA3 481621..483606 (+) 1986 WP_155127073.1 peptide ABC transporter substrate-binding protein Regulator
  AB4X21_RS02580 (AB4X21_02580) amiC 483680..485179 (+) 1500 WP_070595566.1 ABC transporter permease Regulator
  AB4X21_RS02585 (AB4X21_02585) amiD 485179..486105 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  AB4X21_RS02590 (AB4X21_02590) amiE 486117..487184 (+) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  AB4X21_RS02595 (AB4X21_02595) amiF 487195..488118 (+) 924 WP_369088139.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72646.11 Da        Isoelectric Point: 5.2757

>NTDB_id=1029410 AB4X21_RS02575 WP_155127073.1 481621..483606(+) (amiA3) [Streptococcus sp. CP1998]
MKKGKVFAVAGVTLLAAGLLAACSSSNTSKASSGEDKNYGYVYTSDPTTLDYTISSKAATHDITTNVVDGLLENDKYGNL
VPSLAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAKDFVTGLKHAADKKSETLPLVQGSVKGLDDYVQGKITDFS
QVGVKAVDDYTLQYTLNKPETFWNSKTTNGILFPISTEFLKSKGDDFGQPNDVKSILANGPFLLKSITSKSSVVFEKNDN
YWDKKNVHLKEVKYTYYDGSDQDSLARGFSDGAYTKARLFPASSNFATVEKKYKDDIFTTPAGSGVAVLGFNLDRQSYKH
TAKKSDAEKTATKKAILNKDFRQAITFALNRENYSAQVNGKEFAKPAIRNTYVAPAFVQVDGKDFGNVVADKLTTYGDQW
KGINLADGQDGLYNKDKAKAQLEKAKAELQKDGVQFPIHIDVPVAQNSTNFVSRMQSLKQTVEDTLGKDNVVLDLQMMDS
DEVLNITLNVPSAADADWDLQGMVGWNPDYDDPSTYLDTLQPASEDQTKVYLGFAGGVDNPSAKAVGLDEFAKLLDDANN
ETQDVVKRYEKYAVAQAWLTDSAIVIPTMSSTGAATVVSKVVPFSEPSSQTGNKGSTYLKYVEVQDEPVTKKQYDEALKK
WQKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=1029410 AB4X21_RS02575 WP_155127073.1 481621..483606(+) (amiA3) [Streptococcus sp. CP1998]
ATGAAAAAAGGTAAAGTATTCGCAGTTGCCGGAGTAACACTCCTTGCAGCTGGATTGTTAGCTGCATGTTCTAGTTCAAA
TACTAGCAAAGCAAGCTCAGGCGAAGACAAAAACTATGGTTATGTCTACACTTCAGATCCAACAACTTTGGACTATACAA
TTTCTTCTAAAGCTGCTACCCATGACATCACTACAAATGTGGTAGACGGTTTGTTAGAAAATGATAAATACGGTAACCTT
GTACCTTCACTTGCGGAAGACTGGTCTGTTTCTAAAGATGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATG
GTATGATGCGGATGGTGAAGAACACGGCGAAGTGACTGCCAAAGACTTCGTGACTGGTTTGAAACACGCTGCTGATAAAA
AATCGGAAACTCTTCCACTCGTTCAAGGTTCTGTCAAAGGATTGGATGATTATGTCCAAGGAAAAATCACAGACTTCAGC
CAAGTTGGTGTCAAAGCGGTTGATGATTACACACTTCAATACACATTGAACAAACCTGAAACTTTCTGGAACTCTAAAAC
GACTAACGGAATTTTGTTCCCAATAAGCACAGAGTTCTTGAAGAGTAAGGGAGATGATTTTGGTCAACCAAACGATGTGA
AGTCAATCCTTGCAAACGGACCTTTCCTTCTTAAATCAATCACTTCAAAATCATCTGTTGTATTTGAAAAGAATGACAAC
TACTGGGATAAGAAAAACGTTCACCTGAAAGAAGTAAAATATACTTATTACGATGGATCAGACCAAGATTCATTGGCACG
TGGATTCTCTGATGGTGCTTATACAAAAGCTCGCCTTTTCCCTGCAAGTTCAAACTTTGCAACTGTAGAGAAAAAATATA
AAGACGATATCTTTACTACACCAGCAGGATCAGGTGTAGCAGTTCTTGGCTTTAACCTTGATCGTCAATCTTACAAACAC
ACTGCTAAAAAATCAGATGCTGAAAAGACTGCGACTAAGAAAGCAATTTTGAACAAAGATTTCCGTCAGGCCATCACTTT
TGCCTTGAACCGTGAAAACTACTCAGCACAAGTCAATGGTAAAGAATTTGCTAAACCAGCTATCCGTAATACATATGTTG
CACCTGCATTCGTACAAGTAGATGGAAAAGACTTCGGAAATGTAGTTGCAGATAAGTTGACTACTTATGGAGACCAATGG
AAGGGTATCAACCTTGCAGATGGTCAAGATGGTCTTTATAACAAGGATAAAGCGAAAGCGCAACTTGAAAAAGCCAAAGC
TGAACTTCAAAAAGATGGTGTTCAATTCCCAATTCATATTGATGTACCGGTAGCACAAAATTCTACAAACTTTGTTTCAC
GGATGCAATCTCTGAAACAAACGGTAGAAGATACTCTTGGTAAAGACAATGTCGTTCTTGATCTTCAAATGATGGACTCA
GACGAAGTGTTGAATATTACTTTGAATGTGCCATCAGCTGCAGACGCAGACTGGGATCTTCAAGGAATGGTAGGATGGAA
CCCAGACTATGATGATCCATCAACTTACCTTGATACTCTTCAACCAGCTTCTGAGGACCAAACAAAAGTTTACCTTGGTT
TTGCAGGTGGTGTAGATAACCCATCAGCAAAAGCTGTAGGTTTGGATGAGTTTGCAAAACTTCTTGACGATGCAAACAAC
GAAACACAAGATGTTGTGAAACGTTATGAAAAATACGCAGTAGCTCAAGCTTGGTTGACAGATAGTGCGATTGTTATTCC
AACAATGTCAAGTACAGGTGCTGCAACAGTTGTTTCTAAGGTAGTTCCATTCTCTGAACCATCATCACAAACAGGTAACA
AAGGTTCAACATACTTGAAATACGTTGAAGTTCAAGATGAGCCGGTTACTAAGAAACAATACGATGAAGCCCTTAAGAAA
TGGCAAAAAGAAAAAGCTGAGTCAAACAAAAAAGCTCAACAAGATCTTGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8V7E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.735

100

0.59
  amiA3 Streptococcus thermophilus LMG 18311

58.283

100

0.585
  amiA Streptococcus salivarius strain HSISS4

58.157

100

0.582

Multiple sequence alignment