Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   AB4X21_RS02580 Genome accession   NZ_CP163380
Coordinates   483680..485179 (+) Length   499 a.a.
NCBI ID   WP_070595566.1    Uniprot ID   A0AB39LEJ8
Organism   Streptococcus sp. CP1998     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 478680..490179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS02565 (AB4X21_02565) sufB 478703..480115 (+) 1413 WP_003010279.1 Fe-S cluster assembly protein SufB -
  AB4X21_RS02570 (AB4X21_02570) - 480174..481415 (-) 1242 WP_320910915.1 serine hydrolase -
  AB4X21_RS02575 (AB4X21_02575) amiA3 481621..483606 (+) 1986 WP_155127073.1 peptide ABC transporter substrate-binding protein Regulator
  AB4X21_RS02580 (AB4X21_02580) amiC 483680..485179 (+) 1500 WP_070595566.1 ABC transporter permease Regulator
  AB4X21_RS02585 (AB4X21_02585) amiD 485179..486105 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  AB4X21_RS02590 (AB4X21_02590) amiE 486117..487184 (+) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  AB4X21_RS02595 (AB4X21_02595) amiF 487195..488118 (+) 924 WP_369088139.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55945.98 Da        Isoelectric Point: 10.0791

>NTDB_id=1029411 AB4X21_RS02580 WP_070595566.1 483680..485179(+) (amiC) [Streptococcus sp. CP1998]
MKKYVFMRILRSLVSIFLVTTLTYMIIYTLTPRNLIFKNDPNYNKVAKTKDSKINYENTVYDRMGYLEYMDSKSLQQKAS
KEDSSVTVDATNANEKIYKKYIEKLGHGWQLKRFPESKSFYAVREIPVFERVISFYANLIQFDHPGWVKDASNPNLKRYI
RIENDPSIGWSVVGSGTKHKYLLYFNGQFPYVHQNFVTLNLGNSYPTYSNTPVLQVITQGQGTTKKSEVNFPTGKKTSSI
DIYSRTYKSPSKADSQDISRFGKGDAYTATLSNYENPSMIASSSIIGLIGIAIAYLIAIPLGSYMALFKDSWFDSISTAA
LTFMMSLPTIALVYIVRLAGSFFGLPDSFPVLGAQDWRSYVLPSLILGLLSAPFIAVWIRRYMIDIHSQDFVRFARSKGL
SEREISRKHIFKNAMVPLVSGIPGAIIGVISGATLTETVFAFPGMGKMLIDSIKASNNTMVIGLVFIFTSLGIFAAMLGD
ILMTVLDPRIKLTNTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1029411 AB4X21_RS02580 WP_070595566.1 483680..485179(+) (amiC) [Streptococcus sp. CP1998]
ATGAAAAAATATGTTTTTATGCGTATTTTGCGTTCGTTAGTGTCGATCTTTCTCGTCACGACATTAACCTACATGATTAT
CTATACGCTAACACCGAGAAATCTCATCTTTAAGAATGACCCCAACTACAATAAAGTAGCGAAGACAAAAGATTCGAAGA
TCAACTACGAAAATACAGTCTATGATCGCATGGGTTATTTGGAATACATGGATTCAAAGAGCTTGCAACAAAAAGCAAGT
AAAGAAGATTCTTCCGTAACGGTTGATGCGACAAATGCCAATGAAAAGATCTACAAAAAATATATTGAAAAATTAGGTCA
TGGTTGGCAGTTGAAACGTTTTCCAGAAAGTAAGTCTTTCTATGCGGTGCGTGAAATTCCGGTTTTTGAACGTGTCATCA
GCTTCTATGCGAATTTGATTCAGTTTGATCATCCAGGTTGGGTGAAAGATGCCTCAAATCCAAACCTCAAACGCTATATC
CGTATTGAAAATGATCCATCTATTGGTTGGTCAGTTGTAGGTTCTGGTACGAAACACAAATACCTCTTGTACTTTAATGG
TCAATTCCCATATGTGCACCAAAACTTTGTAACCTTAAACCTTGGAAATTCATATCCAACTTATTCAAATACCCCTGTTC
TTCAAGTTATTACCCAAGGACAAGGAACGACTAAGAAGAGTGAAGTGAACTTCCCAACAGGTAAAAAGACATCTTCCATC
GATATCTACTCACGTACCTACAAATCACCAAGTAAGGCAGACTCACAAGATATCAGTCGATTTGGTAAAGGGGATGCCTA
TACAGCAACGTTGAGCAACTATGAGAATCCATCCATGATTGCATCTTCTTCAATCATTGGTTTGATTGGTATTGCGATTG
CTTACTTGATTGCGATCCCATTAGGATCTTACATGGCTCTGTTCAAGGACTCATGGTTTGATAGCATCTCTACTGCGGCT
TTGACATTTATGATGTCTCTCCCAACCATTGCCCTTGTCTATATCGTGCGTCTAGCAGGTTCATTCTTTGGACTTCCAGA
CTCATTCCCAGTACTTGGAGCACAGGACTGGCGTTCATATGTATTGCCGTCTCTGATTCTTGGTTTATTGAGTGCGCCAT
TTATCGCCGTTTGGATTCGTCGTTACATGATCGATATTCACTCTCAGGATTTCGTCCGTTTTGCTCGTTCAAAAGGATTG
TCAGAACGTGAGATCTCAAGAAAACACATCTTCAAAAATGCGATGGTTCCACTAGTTTCTGGAATTCCAGGGGCTATCAT
TGGAGTTATCTCAGGTGCGACGTTGACTGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTATTA
AAGCATCAAACAACACCATGGTCATCGGACTTGTCTTCATCTTCACATCACTTGGTATCTTTGCTGCCATGTTAGGTGAT
ATCTTGATGACAGTGCTTGATCCACGGATTAAATTAACGAATACGAAAGGAGGCAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

71.142

100

0.711
  amiC Streptococcus thermophilus LMD-9

70.942

100

0.709
  amiC Streptococcus thermophilus LMG 18311

70.942

100

0.709

Multiple sequence alignment