Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AB4X21_RS02590 Genome accession   NZ_CP163380
Coordinates   486117..487184 (+) Length   355 a.a.
NCBI ID   WP_003010293.1    Uniprot ID   A0A3R9IVN1
Organism   Streptococcus sp. CP1998     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 481117..492184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS02575 (AB4X21_02575) amiA3 481621..483606 (+) 1986 WP_155127073.1 peptide ABC transporter substrate-binding protein Regulator
  AB4X21_RS02580 (AB4X21_02580) amiC 483680..485179 (+) 1500 WP_070595566.1 ABC transporter permease Regulator
  AB4X21_RS02585 (AB4X21_02585) amiD 485179..486105 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  AB4X21_RS02590 (AB4X21_02590) amiE 486117..487184 (+) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  AB4X21_RS02595 (AB4X21_02595) amiF 487195..488118 (+) 924 WP_369088139.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39500.04 Da        Isoelectric Point: 4.5938

>NTDB_id=1029413 AB4X21_RS02590 WP_003010293.1 486117..487184(+) (amiE) [Streptococcus sp. CP1998]
MTSNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELEEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIKYRGQEL
TDLKSNKDWENIRGSKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTAKEAKEMALDYMEKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIKGDAFALRSDYAMQIDFEEEAPAFKVTDTHWAK
TWLLHPDAPTVHKPEVIENLHEKIGSKMGFTHITE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1029413 AB4X21_RS02590 WP_003010293.1 486117..487184(+) (amiE) [Streptococcus sp. CP1998]
ATGACATCAAATAACAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGACGTGCGCGATCGCGTATTGACAGC
TATTCGTGGCGTATCGCTTGAGCTAGAAGAAGGTGAAGTTCTTGCCTTAGTTGGTGAGTCAGGTTCAGGGAAATCAGTTT
TGACAAAAACGTTCACCGGAATGTTAGAAGATAATGGCCGTATTGCCCAAGGTTCGATTAAATACCGTGGTCAAGAATTG
ACAGATTTGAAATCGAATAAAGATTGGGAAAATATTCGTGGATCTAAGATCGCTACAATTTTCCAAGACCCAATGACAAG
TTTGGACCCAATCAACACAATTGGATCACAAATTACAGAAGTCATTATCAAACACCAAGGGAAAACAGCTAAAGAAGCCA
AAGAAATGGCTTTGGATTATATGGAGAAAGTTGGAATTCCAGATGCTGAACGTCGTTTTGATGAGTATCCATTCCAATAT
TCAGGTGGGATGCGTCAACGGATCGTTATTGCCATCGCCTTGGCCTGCCGTCCAGATATCTTAATCTGTGACGAACCAAC
AACAGCCCTTGACGTAACCATTCAAGCGCAAATCATTGATTTGTTGAAATCCCTTCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGATTTAGGTGTGGTTGCAAGTATTGCAGATAAAGTAGCCGTTATGTATGCTGGAGAAATTGTTGAG
TTTGGTAAAGTAGAAGAAATTTTCTACGATCCAAAACATCCATACACATGGAGCTTGCTTTCAAGCTTGCCTCAATTGTC
AACCTCAGATGGTGATCTTTACTCTATTCCAGGGACTCCGCCATCATTGTATGCTCCAATCAAAGGAGATGCCTTCGCAC
TTCGTTCAGATTATGCGATGCAGATTGATTTTGAAGAAGAGGCACCCGCTTTCAAAGTGACCGATACTCACTGGGCTAAG
ACATGGTTGCTCCATCCAGATGCACCAACAGTTCATAAACCAGAAGTAATCGAAAACCTTCACGAAAAGATTGGCTCAAA
AATGGGCTTCACTCACATTACAGAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9IVN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.003

99.437

0.825
  amiE Streptococcus thermophilus LMG 18311

82.153

99.437

0.817
  amiE Streptococcus thermophilus LMD-9

82.153

99.437

0.817
  oppD Streptococcus mutans UA159

57.681

97.183

0.561

Multiple sequence alignment