Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   AB4X21_RS02585 Genome accession   NZ_CP163380
Coordinates   485179..486105 (+) Length   308 a.a.
NCBI ID   WP_003010290.1    Uniprot ID   A0AB39LCL1
Organism   Streptococcus sp. CP1998     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 480179..491105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4X21_RS02575 (AB4X21_02575) amiA3 481621..483606 (+) 1986 WP_155127073.1 peptide ABC transporter substrate-binding protein Regulator
  AB4X21_RS02580 (AB4X21_02580) amiC 483680..485179 (+) 1500 WP_070595566.1 ABC transporter permease Regulator
  AB4X21_RS02585 (AB4X21_02585) amiD 485179..486105 (+) 927 WP_003010290.1 oligopeptide ABC transporter permease OppC Regulator
  AB4X21_RS02590 (AB4X21_02590) amiE 486117..487184 (+) 1068 WP_003010293.1 ABC transporter ATP-binding protein Regulator
  AB4X21_RS02595 (AB4X21_02595) amiF 487195..488118 (+) 924 WP_369088139.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34580.61 Da        Isoelectric Point: 9.8986

>NTDB_id=1029412 AB4X21_RS02585 WP_003010290.1 485179..486105(+) (amiD) [Streptococcus sp. CP1998]
MATIDKNKFQFVKRDDFASEVIDAPAYSYWKSVFRQFLKKRTTIIMLAILIGILLMSFVYPMFSNFDYNDVSKVNDFSAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATVINVVVGVIVGGIWGISKSIDRIMMEVYNVISNIPFMLIVIV
LTYSMGSGFWNLILAMSLTGWIGIAYTIRVQIMRYRDLEYNLASRTLGTPTLKIVTKNILPQLVSVIVTQTSQLLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLILVSLSFFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1029412 AB4X21_RS02585 WP_003010290.1 485179..486105(+) (amiD) [Streptococcus sp. CP1998]
ATGGCTACAATCGATAAAAATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGTAATCGATGCTCCAGCGTA
TTCATACTGGAAATCTGTATTCAGACAATTCTTGAAAAAAAGAACCACTATCATTATGCTTGCTATTTTGATTGGGATTC
TCTTGATGAGTTTTGTCTACCCGATGTTTTCAAATTTTGATTACAACGACGTAAGTAAGGTAAATGACTTTTCAGCACGT
TTGAATCCACCAAGTGCCAAAGCTTTCTTTGGTACAGATAATAACGGTAAATCCCTCTTTGATGGAGTTTGGTTTGGTGC
TCGGAATTCAATTATCATTTCCTTCATCGCCACTGTTATTAACGTGGTTGTCGGAGTTATCGTTGGTGGAATTTGGGGGA
TCTCAAAATCCATCGACCGTATCATGATGGAAGTTTATAACGTTATTTCAAACATTCCGTTTATGTTGATCGTTATCGTC
TTGACTTACTCAATGGGATCTGGTTTCTGGAACTTGATTCTTGCCATGTCCTTAACTGGATGGATCGGAATTGCCTATAC
CATTCGTGTCCAAATCATGCGTTACCGTGATTTGGAGTACAACCTTGCCAGCCGAACATTAGGAACACCAACTTTGAAAA
TTGTTACGAAAAATATTTTGCCTCAATTGGTATCTGTTATCGTGACACAAACATCACAGTTACTTCCAAGCTTTATTTCT
TATGAAGCTTTCCTTTCCTTCTTCGGACTTGGTCTTCCAATCACAGTTCCAAGTTTGGGACGCTTGATTTCTGACTATTC
TCAAAACGTAACTACAAATGCCTACCTATTCTGGATTCCGCTTACTGTTTTGATTTTAGTATCCTTGTCATTCTTTATCG
TCGGACAAAACTTGGCCGATGCCAGCGACCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

79.545

100

0.795
  amiD Streptococcus thermophilus LMG 18311

78.247

100

0.782
  amiD Streptococcus thermophilus LMD-9

78.247

100

0.782

Multiple sequence alignment