Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB4073_RS02600 Genome accession   NZ_CP162643
Coordinates   552826..553635 (+) Length   269 a.a.
NCBI ID   WP_081172672.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 547826..558635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS02565 (AB4073_02565) - 548383..548538 (-) 156 WP_014207816.1 hypothetical protein -
  AB4073_RS02570 (AB4073_02570) rpoZ 548577..548855 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  AB4073_RS02575 (AB4073_02575) gmk 548928..549557 (-) 630 WP_002116973.1 guanylate kinase -
  AB4073_RS02580 (AB4073_02580) ispH 549680..550630 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB4073_RS02585 (AB4073_02585) fimU 550801..551274 (+) 474 WP_368678364.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB4073_RS02590 (AB4073_02590) pilV 551268..551828 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  AB4073_RS02595 (AB4073_02595) pilW 551828..552829 (+) 1002 WP_368678365.1 PilW family protein Machinery gene
  AB4073_RS02600 (AB4073_02600) pilX 552826..553635 (+) 810 WP_081172672.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB4073_RS02605 (AB4073_02605) pilY1 553647..557501 (+) 3855 WP_368678366.1 PilC/PilY family type IV pilus protein Machinery gene
  AB4073_RS02610 (AB4073_02610) pilY2 557512..557994 (+) 483 WP_368678367.1 type IV pilin protein Machinery gene
  AB4073_RS02615 (AB4073_02615) pilE 557991..558416 (+) 426 WP_368678368.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28514.43 Da        Isoelectric Point: 7.2645

>NTDB_id=1027751 AB4073_RS02600 WP_081172672.1 552826..553635(+) (pilX) [Acinetobacter lactucae strain 128-92]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSMQRIRVITTAFLPAYASASIEILQRDCLSTSSAKISDNFDTALAAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1027751 AB4073_RS02600 WP_081172672.1 552826..553635(+) (pilX) [Acinetobacter lactucae strain 128-92]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTACTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTCTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACCAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAACCCAGGTGCAGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCAGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGAAGTAATCGCCAAGCAGTGGTTACTCAAGTTGCCGTAAGTATTCCAACAGAT
GCTGCTAGCGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTCCCTAAAAGCATGTT
GTCTATGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTGCCTCTATTGAAATTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAGCGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907

Multiple sequence alignment