Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3456_RS11010 | Genome accession | NZ_CP162632 |
| Coordinates | 2257493..2257969 (-) | Length | 158 a.a. |
| NCBI ID | WP_107551289.1 | Uniprot ID | A0A1L7RVF2 |
| Organism | Staphylococcus pseudoxylosus strain Hao 2022 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2225605..2265525 | 2257493..2257969 | within | 0 |
Gene organization within MGE regions
Location: 2225605..2265525
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3456_RS10815 (AB3456_10815) | - | 2225605..2226972 (-) | 1368 | WP_107551257.1 | SH3 domain-containing protein | - |
| AB3456_RS10820 (AB3456_10820) | - | 2227025..2227336 (-) | 312 | WP_107551258.1 | holin | - |
| AB3456_RS10825 (AB3456_10825) | - | 2227388..2227696 (-) | 309 | WP_142382777.1 | hypothetical protein | - |
| AB3456_RS10830 (AB3456_10830) | - | 2227734..2227886 (-) | 153 | WP_107551259.1 | XkdX family protein | - |
| AB3456_RS10835 (AB3456_10835) | - | 2227890..2228294 (-) | 405 | WP_107551260.1 | hypothetical protein | - |
| AB3456_RS10840 (AB3456_10840) | - | 2228306..2229814 (-) | 1509 | WP_158262912.1 | BppU family phage baseplate upper protein | - |
| AB3456_RS10845 (AB3456_10845) | - | 2229826..2232456 (-) | 2631 | WP_107551262.1 | peptidase G2 autoproteolytic cleavage domain-containing protein | - |
| AB3456_RS10850 (AB3456_10850) | - | 2232470..2233039 (-) | 570 | WP_107551263.1 | hypothetical protein | - |
| AB3456_RS10855 (AB3456_10855) | - | 2233032..2234633 (-) | 1602 | WP_107551264.1 | prophage endopeptidase tail family protein | - |
| AB3456_RS10860 (AB3456_10860) | - | 2234643..2235479 (-) | 837 | WP_119585005.1 | phage tail domain-containing protein | - |
| AB3456_RS10865 (AB3456_10865) | - | 2235493..2241963 (-) | 6471 | WP_107551266.1 | phage tail tape measure protein | - |
| AB3456_RS10870 (AB3456_10870) | - | 2241986..2242150 (-) | 165 | WP_182478062.1 | hypothetical protein | - |
| AB3456_RS10875 (AB3456_10875) | gpG | 2242192..2242542 (-) | 351 | WP_107551267.1 | phage tail assembly chaperone G | - |
| AB3456_RS10880 (AB3456_10880) | - | 2242610..2243140 (-) | 531 | WP_107551268.1 | Ig-like domain-containing protein | - |
| AB3456_RS10885 (AB3456_10885) | - | 2243236..2243868 (-) | 633 | WP_107551269.1 | major tail protein | - |
| AB3456_RS10890 (AB3456_10890) | - | 2243902..2244297 (-) | 396 | WP_107551270.1 | hypothetical protein | - |
| AB3456_RS10895 (AB3456_10895) | - | 2244294..2244719 (-) | 426 | WP_107551271.1 | hypothetical protein | - |
| AB3456_RS10900 (AB3456_10900) | - | 2244706..2245005 (-) | 300 | WP_368679757.1 | hypothetical protein | - |
| AB3456_RS10905 (AB3456_10905) | - | 2245053..2245340 (-) | 288 | WP_107551273.1 | head-tail connector protein | - |
| AB3456_RS10910 (AB3456_10910) | - | 2245413..2246588 (-) | 1176 | WP_107551274.1 | phage major capsid protein | - |
| AB3456_RS10915 (AB3456_10915) | - | 2246604..2247374 (-) | 771 | WP_107551275.1 | head maturation protease, ClpP-related | - |
| AB3456_RS10920 (AB3456_10920) | - | 2247325..2248596 (-) | 1272 | WP_107551276.1 | phage portal protein | - |
| AB3456_RS10925 (AB3456_10925) | - | 2248600..2250294 (-) | 1695 | WP_107551277.1 | terminase large subunit | - |
| AB3456_RS10930 (AB3456_10930) | - | 2250284..2250592 (-) | 309 | WP_017722721.1 | P27 family phage terminase small subunit | - |
| AB3456_RS10935 (AB3456_10935) | - | 2250692..2251018 (-) | 327 | WP_241962505.1 | HNH endonuclease | - |
| AB3456_RS10940 (AB3456_10940) | - | 2251609..2252007 (-) | 399 | WP_107551278.1 | hypothetical protein | - |
| AB3456_RS10945 (AB3456_10945) | - | 2252066..2252314 (-) | 249 | WP_107551279.1 | hypothetical protein | - |
| AB3456_RS10950 (AB3456_10950) | - | 2252328..2252474 (-) | 147 | WP_158262913.1 | hypothetical protein | - |
| AB3456_RS10955 (AB3456_10955) | - | 2252504..2252686 (-) | 183 | WP_107551280.1 | DUF1381 domain-containing protein | - |
| AB3456_RS10960 (AB3456_10960) | - | 2252793..2253128 (+) | 336 | WP_107551281.1 | DUF4870 domain-containing protein | - |
| AB3456_RS10965 (AB3456_10965) | - | 2253336..2253707 (-) | 372 | WP_107551282.1 | SA1788 family PVL leukocidin-associated protein | - |
| AB3456_RS10970 (AB3456_10970) | - | 2253720..2253917 (-) | 198 | WP_107551283.1 | hypothetical protein | - |
| AB3456_RS10975 (AB3456_10975) | - | 2253910..2254320 (-) | 411 | WP_107551284.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB3456_RS10980 (AB3456_10980) | - | 2254331..2254543 (-) | 213 | WP_058625967.1 | hypothetical protein | - |
| AB3456_RS10985 (AB3456_10985) | - | 2254544..2254714 (-) | 171 | WP_158262914.1 | hypothetical protein | - |
| AB3456_RS10990 (AB3456_10990) | - | 2254715..2255497 (-) | 783 | WP_107551285.1 | ATP-binding protein | - |
| AB3456_RS10995 (AB3456_10995) | - | 2255510..2256271 (-) | 762 | WP_107551286.1 | DnaD domain protein | - |
| AB3456_RS11000 (AB3456_11000) | - | 2256258..2256935 (-) | 678 | WP_119584999.1 | putative HNHc nuclease | - |
| AB3456_RS11005 (AB3456_11005) | - | 2256936..2257490 (-) | 555 | WP_368679758.1 | NUMOD4 domain-containing protein | - |
| AB3456_RS11010 (AB3456_11010) | ssbA | 2257493..2257969 (-) | 477 | WP_107551289.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3456_RS11015 (AB3456_11015) | - | 2257966..2258628 (-) | 663 | WP_107551290.1 | ERF family protein | - |
| AB3456_RS11020 (AB3456_11020) | - | 2258621..2258875 (-) | 255 | WP_158262915.1 | DUF2483 family protein | - |
| AB3456_RS11025 (AB3456_11025) | - | 2258868..2259110 (-) | 243 | WP_368679759.1 | hypothetical protein | - |
| AB3456_RS11030 (AB3456_11030) | - | 2259104..2259367 (-) | 264 | WP_107551292.1 | DUF1108 family protein | - |
| AB3456_RS11035 (AB3456_11035) | - | 2259433..2259612 (-) | 180 | WP_107551293.1 | hypothetical protein | - |
| AB3456_RS11040 (AB3456_11040) | - | 2259614..2259931 (-) | 318 | WP_107551294.1 | DUF771 domain-containing protein | - |
| AB3456_RS11045 (AB3456_11045) | - | 2260081..2260851 (-) | 771 | WP_107551295.1 | phage antirepressor KilAC domain-containing protein | - |
| AB3456_RS11050 (AB3456_11050) | - | 2260897..2261109 (-) | 213 | WP_107551296.1 | helix-turn-helix transcriptional regulator | - |
| AB3456_RS11055 (AB3456_11055) | - | 2261263..2261994 (+) | 732 | WP_107551297.1 | XRE family transcriptional regulator | - |
| AB3456_RS11060 (AB3456_11060) | - | 2262270..2263067 (+) | 798 | WP_119584997.1 | Ltp family lipoprotein | - |
| AB3456_RS11065 (AB3456_11065) | - | 2263397..2263633 (+) | 237 | WP_119585009.1 | hypothetical protein | - |
| AB3456_RS11070 (AB3456_11070) | - | 2263654..2264430 (+) | 777 | WP_107551299.1 | DUF1828 domain-containing protein | - |
| AB3456_RS11075 (AB3456_11075) | - | 2264488..2265525 (+) | 1038 | WP_107551300.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17444.40 Da Isoelectric Point: 7.7860
>NTDB_id=1027733 AB3456_RS11010 WP_107551289.1 2257493..2257969(-) (ssbA) [Staphylococcus pseudoxylosus strain Hao 2022]
MINRVILVGRLTKDPEFRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFKKQAENVNKYLSKGKLAGVEGRIQSR
SYENKEGQRVFVTEVVTDSVQFLEPKNNGQANNVSKGQQTGTNNQRSSNDNPFANNNGPIDIKDDDLPFDLASIKEAC
MINRVILVGRLTKDPEFRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFKKQAENVNKYLSKGKLAGVEGRIQSR
SYENKEGQRVFVTEVVTDSVQFLEPKNNGQANNVSKGQQTGTNNQRSSNDNPFANNNGPIDIKDDDLPFDLASIKEAC
Nucleotide
Download Length: 477 bp
>NTDB_id=1027733 AB3456_RS11010 WP_107551289.1 2257493..2257969(-) (ssbA) [Staphylococcus pseudoxylosus strain Hao 2022]
ATGATTAACAGAGTCATATTAGTAGGACGTTTAACGAAAGACCCAGAATTCAGAACAACACCATCTGGCGTAAGTGTCGC
AACTTTCACCCTAGCTGTTAATAGAACATTCACAAATGCACAGGGTGAACGTGAAGCAGATTTTATAAATTGTGTTGTAT
TTAAAAAGCAAGCAGAGAACGTAAATAAATATTTATCTAAAGGTAAGTTAGCTGGTGTTGAAGGTCGTATTCAATCACGT
AGCTATGAAAATAAAGAAGGTCAGCGTGTGTTCGTTACGGAAGTTGTCACAGACAGTGTTCAATTCTTGGAACCTAAAAA
CAACGGACAGGCAAACAACGTTTCTAAAGGACAACAAACAGGCACGAATAATCAACGTTCAAGCAATGATAACCCATTCG
CTAATAACAATGGACCTATTGATATTAAAGATGATGACCTCCCTTTTGATTTAGCCTCCATTAAGGAGGCCTGCTAA
ATGATTAACAGAGTCATATTAGTAGGACGTTTAACGAAAGACCCAGAATTCAGAACAACACCATCTGGCGTAAGTGTCGC
AACTTTCACCCTAGCTGTTAATAGAACATTCACAAATGCACAGGGTGAACGTGAAGCAGATTTTATAAATTGTGTTGTAT
TTAAAAAGCAAGCAGAGAACGTAAATAAATATTTATCTAAAGGTAAGTTAGCTGGTGTTGAAGGTCGTATTCAATCACGT
AGCTATGAAAATAAAGAAGGTCAGCGTGTGTTCGTTACGGAAGTTGTCACAGACAGTGTTCAATTCTTGGAACCTAAAAA
CAACGGACAGGCAAACAACGTTTCTAAAGGACAACAAACAGGCACGAATAATCAACGTTCAAGCAATGATAACCCATTCG
CTAATAACAATGGACCTATTGATATTAAAGATGATGACCTCCCTTTTGATTTAGCCTCCATTAAGGAGGCCTGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60 |
100 |
0.665 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
67.089 |
0.405 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.268 |
94.304 |
0.38 |
| ssb | Glaesserella parasuis strain SC1401 |
31.844 |
100 |
0.361 |
| ssbA | Streptococcus mutans UA159 |
38.255 |
94.304 |
0.361 |