Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   STN4L_RS10280 Genome accession   NZ_LS974444
Coordinates   499882..500100 (-) Length   72 a.a.
NCBI ID   WP_011681105.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain N4L     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 494882..505100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STN4L_RS10725 (STN4L_00600) - 495065..495424 (-) 360 WP_258258844.1 CRISPR-associated endonuclease Cas1 -
  STN4L_RS02575 (STN4L_00601) cas1 495369..496049 (-) 681 WP_258258843.1 CRISPR-associated endonuclease Cas1 -
  STN4L_RS02580 (STN4L_00602) - 496188..497135 (-) 948 WP_014608279.1 dihydroorotate dehydrogenase -
  STN4L_RS02585 (STN4L_00603) - 497154..497927 (-) 774 WP_011681108.1 dihydroorotate dehydrogenase electron transfer subunit -
  STN4L_RS02590 - 497926..498141 (+) 216 WP_011681107.1 hypothetical protein -
  STN4L_RS02595 (STN4L_00604) - 498198..498746 (-) 549 WP_113870361.1 DJ-1 family glyoxalase III -
  STN4L_RS10275 (STN4L_00605) - 498880..499011 (-) 132 WP_113870362.1 TraX family protein -
  STN4L_RS02605 (STN4L_00606) - 499012..499680 (-) 669 WP_011681106.1 TraX family protein -
  STN4L_RS10280 (STN4L_00607) prx 499882..500100 (-) 219 WP_011681105.1 hypothetical protein Regulator
  STN4L_RS02615 (STN4L_00608) - 500537..500728 (-) 192 WP_011681104.1 hypothetical protein -
  STN4L_RS02620 (STN4L_00609) - 500732..501217 (-) 486 WP_014607832.1 NUDIX hydrolase -
  STN4L_RS02625 (STN4L_00610) - 501523..502479 (-) 957 WP_014727508.1 DUF6994 family protein -
  STN4L_RS02630 (STN4L_00611) - 502802..504460 (+) 1659 WP_011681101.1 NFACT family protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8147.18 Da        Isoelectric Point: 4.4665

>NTDB_id=1026481 STN4L_RS10280 WP_011681105.1 499882..500100(-) (prx) [Streptococcus thermophilus strain N4L]
MNSIGKENNIILTYDEFKEAMDNGFIKGDTVQIVRKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELGGDN

Nucleotide


Download         Length: 219 bp        

>NTDB_id=1026481 STN4L_RS10280 WP_011681105.1 499882..500100(-) (prx) [Streptococcus thermophilus strain N4L]
ATGAATAGCATAGGAAAGGAGAATAATATAATACTAACCTATGATGAATTTAAAGAGGCTATGGACAACGGTTTTATTAA
AGGTGATACTGTCCAGATTGTCCGAAAGAATGGTAAGATCCATGACTACGTTTTAGACGGTGAACGAGTTGAGCCACACG
AAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAAGAACTAGGCGGAGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

58.621

80.556

0.472
  prx Streptococcus pyogenes MGAS8232

57.627

81.944

0.472
  prx Streptococcus pyogenes MGAS315

55.932

81.944

0.458
  prx Streptococcus pyogenes MGAS315

55.172

80.556

0.444
  prx Streptococcus pyogenes MGAS315

73.81

58.333

0.431
  prx Streptococcus pyogenes MGAS315

65.909

61.111

0.403
  prx Streptococcus pyogenes MGAS315

68.293

56.944

0.389