Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3433_RS00350 | Genome accession | NZ_CP162469 |
| Coordinates | 65096..65566 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934765.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain TUM20820 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 36556..95070 | 65096..65566 | within | 0 |
Gene organization within MGE regions
Location: 36556..95070
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3433_RS00175 (AB3433_00175) | - | 36556..37182 (-) | 627 | WP_000522384.1 | nitroreductase family protein | - |
| AB3433_RS00180 (AB3433_00180) | - | 37379..38638 (+) | 1260 | WP_000120305.1 | SdrH family protein | - |
| AB3433_RS00185 (AB3433_00185) | mroQ | 38664..39407 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| AB3433_RS00190 (AB3433_00190) | groES | 39582..39866 (+) | 285 | WP_031771823.1 | co-chaperone GroES | - |
| AB3433_RS00195 (AB3433_00195) | groL | 39942..41558 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| AB3433_RS00200 (AB3433_00200) | - | 41653..42199 (-) | 547 | Protein_36 | site-specific integrase | - |
| AB3433_RS00205 (AB3433_00205) | - | 42260..42472 (+) | 213 | WP_000128898.1 | hypothetical protein | - |
| AB3433_RS00210 (AB3433_00210) | - | 42469..43059 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| AB3433_RS00215 (AB3433_00215) | - | 43376..43813 (+) | 438 | WP_072419900.1 | hypothetical protein | - |
| AB3433_RS00220 (AB3433_00220) | - | 43919..44362 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| AB3433_RS00225 (AB3433_00225) | - | 45207..46514 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| AB3433_RS00230 (AB3433_00230) | - | 46675..47586 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| AB3433_RS00235 (AB3433_00235) | - | 47648..48493 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| AB3433_RS00240 (AB3433_00240) | - | 48865..50088 (-) | 1224 | WP_000206623.1 | ArgE/DapE family deacylase | - |
| AB3433_RS00245 (AB3433_00245) | lukH | 50524..51576 (+) | 1053 | WP_000791417.1 | bi-component leukocidin LukGH subunit H | - |
| AB3433_RS00250 (AB3433_00250) | lukG | 51598..52614 (+) | 1017 | WP_261921484.1 | bi-component leukocidin LukGH subunit G | - |
| AB3433_RS00255 (AB3433_00255) | sph | 52852..53682 (-) | 831 | Protein_47 | sphingomyelin phosphodiesterase | - |
| AB3433_RS00260 (AB3433_00260) | - | 53733..54770 (-) | 1038 | WP_000857182.1 | site-specific integrase | - |
| AB3433_RS00265 (AB3433_00265) | sek | 54854..55582 (-) | 729 | WP_000733771.1 | staphylococcal enterotoxin type K | - |
| AB3433_RS00270 (AB3433_00270) | seq | 55606..56334 (-) | 729 | WP_001033320.1 | staphylococcal enterotoxin type Q | - |
| AB3433_RS00275 (AB3433_00275) | - | 56530..57300 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| AB3433_RS00280 (AB3433_00280) | - | 57459..57683 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| AB3433_RS00285 (AB3433_00285) | - | 57701..57961 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| AB3433_RS00290 (AB3433_00290) | - | 57985..58524 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| AB3433_RS00295 (AB3433_00295) | - | 58581..59330 (+) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| AB3433_RS00300 (AB3433_00300) | - | 59346..59543 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| AB3433_RS00305 (AB3433_00305) | - | 59574..59714 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| AB3433_RS00310 (AB3433_00310) | - | 59729..60361 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| AB3433_RS00315 (AB3433_00315) | - | 60420..60740 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| AB3433_RS00320 (AB3433_00320) | - | 60737..60898 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| AB3433_RS00325 (AB3433_00325) | - | 60991..61251 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| AB3433_RS00330 (AB3433_00330) | - | 61260..61523 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| AB3433_RS00335 (AB3433_00335) | - | 61520..63475 (+) | 1956 | WP_064138715.1 | AAA family ATPase | - |
| AB3433_RS00340 (AB3433_00340) | - | 63477..64397 (+) | 921 | WP_340790659.1 | recombinase RecT | - |
| AB3433_RS00345 (AB3433_00345) | - | 64478..65095 (+) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| AB3433_RS00350 (AB3433_00350) | ssbA | 65096..65566 (+) | 471 | WP_000934765.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3433_RS00355 (AB3433_00355) | - | 65596..66489 (+) | 894 | WP_000148328.1 | DnaD domain-containing protein | - |
| AB3433_RS00360 (AB3433_00360) | - | 66496..66714 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| AB3433_RS00365 (AB3433_00365) | - | 66723..67127 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB3433_RS00370 (AB3433_00370) | - | 67140..67391 (+) | 252 | Protein_70 | SA1788 family PVL leukocidin-associated protein | - |
| AB3433_RS00375 (AB3433_00375) | - | 67376..67471 (+) | 96 | Protein_71 | DUF1381 domain-containing protein | - |
| AB3433_RS00380 (AB3433_00380) | - | 67468..67617 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| AB3433_RS00385 (AB3433_00385) | - | 67776..68426 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| AB3433_RS00390 (AB3433_00390) | - | 68426..68626 (+) | 201 | WP_001570807.1 | DUF1514 family protein | - |
| AB3433_RS00395 (AB3433_00395) | - | 68649..69119 (+) | 471 | WP_000282755.1 | hypothetical protein | - |
| AB3433_RS00400 (AB3433_00400) | - | 69234..69686 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| AB3433_RS00405 (AB3433_00405) | - | 69702..70046 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| AB3433_RS00410 (AB3433_00410) | - | 70175..70642 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
| AB3433_RS00415 (AB3433_00415) | - | 70645..72339 (+) | 1695 | WP_000133304.1 | terminase large subunit | - |
| AB3433_RS00420 (AB3433_00420) | - | 72353..72553 (+) | 201 | WP_000365299.1 | hypothetical protein | - |
| AB3433_RS00425 (AB3433_00425) | - | 72559..73809 (+) | 1251 | WP_000511067.1 | phage portal protein | - |
| AB3433_RS00430 (AB3433_00430) | - | 73802..74386 (+) | 585 | WP_000032525.1 | HK97 family phage prohead protease | - |
| AB3433_RS00435 (AB3433_00435) | - | 74474..75721 (+) | 1248 | WP_000849950.1 | phage major capsid protein | - |
| AB3433_RS00440 (AB3433_00440) | - | 75757..75915 (+) | 159 | WP_001252099.1 | hypothetical protein | - |
| AB3433_RS00445 (AB3433_00445) | - | 75924..76256 (+) | 333 | WP_001177483.1 | head-tail connector protein | - |
| AB3433_RS00450 (AB3433_00450) | - | 76243..76578 (+) | 336 | WP_000975314.1 | head-tail adaptor protein | - |
| AB3433_RS00455 (AB3433_00455) | - | 76578..76955 (+) | 378 | WP_000501244.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AB3433_RS00460 (AB3433_00460) | - | 76952..77332 (+) | 381 | WP_000611454.1 | hypothetical protein | - |
| AB3433_RS00465 (AB3433_00465) | - | 77333..78286 (+) | 954 | WP_000570652.1 | major tail protein | - |
| AB3433_RS00470 (AB3433_00470) | - | 78351..78797 (+) | 447 | WP_000442601.1 | phage tail assembly chaperone G | - |
| AB3433_RS00475 (AB3433_00475) | - | 78857..78979 (+) | 123 | WP_000570353.1 | hypothetical protein | - |
| AB3433_RS00480 (AB3433_00480) | - | 79035..83684 (+) | 4650 | WP_368409822.1 | phage tail tape measure protein | - |
| AB3433_RS00485 (AB3433_00485) | - | 83684..85174 (+) | 1491 | WP_001154317.1 | phage tail domain-containing protein | - |
| AB3433_RS00490 (AB3433_00490) | - | 85190..88972 (+) | 3783 | WP_117219101.1 | phage tail spike protein | - |
| AB3433_RS00495 (AB3433_00495) | - | 88965..89117 (+) | 153 | WP_001000058.1 | hypothetical protein | - |
| AB3433_RS00500 (AB3433_00500) | - | 89163..89450 (+) | 288 | WP_001262621.1 | hypothetical protein | - |
| AB3433_RS00505 (AB3433_00505) | - | 89506..89880 (+) | 375 | WP_000340977.1 | hypothetical protein | - |
| AB3433_RS00510 (AB3433_00510) | sea | 90253..91026 (+) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| AB3433_RS00515 (AB3433_00515) | pepG1 | 91177..91311 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| AB3433_RS00520 (AB3433_00520) | - | 91364..91471 (-) | 108 | WP_031762631.1 | hypothetical protein | - |
| AB3433_RS00525 (AB3433_00525) | - | 91519..91773 (+) | 255 | WP_000611512.1 | phage holin | - |
| AB3433_RS00530 (AB3433_00530) | - | 91785..92540 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| AB3433_RS00535 (AB3433_00535) | sak | 92731..93222 (+) | 492 | WP_000920038.1 | staphylokinase | - |
| AB3433_RS00540 (AB3433_00540) | - | 93873..94208 (+) | 336 | Protein_104 | SH3 domain-containing protein | - |
| AB3433_RS00545 (AB3433_00545) | scn | 94720..95070 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.54 Da Isoelectric Point: 4.9627
>NTDB_id=1026191 AB3433_RS00350 WP_000934765.1 65096..65566(+) (ssbA) [Staphylococcus aureus strain TUM20820]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1026191 AB3433_RS00350 WP_000934765.1 65096..65566(+) (ssbA) [Staphylococcus aureus strain TUM20820]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |