Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3450_RS06280 | Genome accession | NZ_CP162449 |
| Coordinates | 1287605..1288075 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934765.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain TUM20967 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1276242..1317578 | 1287605..1288075 | within | 0 |
Gene organization within MGE regions
Location: 1276242..1317578
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3450_RS06190 (AB3450_06190) | - | 1276242..1277279 (-) | 1038 | WP_000857182.1 | site-specific integrase | - |
| AB3450_RS06195 (AB3450_06195) | sek | 1277363..1278091 (-) | 729 | WP_000733771.1 | staphylococcal enterotoxin type K | - |
| AB3450_RS06200 (AB3450_06200) | seq | 1278115..1278843 (-) | 729 | WP_001033320.1 | staphylococcal enterotoxin type Q | - |
| AB3450_RS06205 (AB3450_06205) | - | 1279039..1279809 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| AB3450_RS06210 (AB3450_06210) | - | 1279968..1280192 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| AB3450_RS06215 (AB3450_06215) | - | 1280210..1280470 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| AB3450_RS06220 (AB3450_06220) | - | 1280494..1281033 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| AB3450_RS06225 (AB3450_06225) | - | 1281090..1281839 (+) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| AB3450_RS06230 (AB3450_06230) | - | 1281855..1282052 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| AB3450_RS06235 (AB3450_06235) | - | 1282083..1282223 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| AB3450_RS06240 (AB3450_06240) | - | 1282238..1282870 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| AB3450_RS06245 (AB3450_06245) | - | 1282929..1283249 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| AB3450_RS06250 (AB3450_06250) | - | 1283246..1283407 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| AB3450_RS06255 (AB3450_06255) | - | 1283500..1283760 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| AB3450_RS06260 (AB3450_06260) | - | 1283769..1284032 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| AB3450_RS06265 (AB3450_06265) | - | 1284029..1285984 (+) | 1956 | WP_064138715.1 | AAA family ATPase | - |
| AB3450_RS06270 (AB3450_06270) | - | 1285986..1286906 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| AB3450_RS06275 (AB3450_06275) | - | 1286987..1287604 (+) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| AB3450_RS06280 (AB3450_06280) | ssbA | 1287605..1288075 (+) | 471 | WP_000934765.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3450_RS06285 (AB3450_06285) | - | 1288105..1288998 (+) | 894 | WP_000148328.1 | DnaD domain-containing protein | - |
| AB3450_RS06290 (AB3450_06290) | - | 1289005..1289223 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| AB3450_RS06295 (AB3450_06295) | - | 1289232..1289636 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB3450_RS06300 (AB3450_06300) | - | 1289649..1289900 (+) | 252 | Protein_1222 | SA1788 family PVL leukocidin-associated protein | - |
| AB3450_RS06305 (AB3450_06305) | - | 1289885..1289980 (+) | 96 | Protein_1223 | DUF1381 domain-containing protein | - |
| AB3450_RS06310 (AB3450_06310) | - | 1289977..1290126 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| AB3450_RS06315 (AB3450_06315) | - | 1290285..1290935 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| AB3450_RS06320 (AB3450_06320) | - | 1290935..1291135 (+) | 201 | WP_001570807.1 | DUF1514 family protein | - |
| AB3450_RS06325 (AB3450_06325) | - | 1291158..1291628 (+) | 471 | WP_000282755.1 | hypothetical protein | - |
| AB3450_RS06330 (AB3450_06330) | - | 1291743..1292195 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| AB3450_RS06335 (AB3450_06335) | - | 1292211..1292555 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| AB3450_RS06340 (AB3450_06340) | - | 1292684..1293151 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
| AB3450_RS06345 (AB3450_06345) | - | 1293154..1294848 (+) | 1695 | WP_000133304.1 | terminase large subunit | - |
| AB3450_RS06350 (AB3450_06350) | - | 1294862..1295062 (+) | 201 | WP_000365299.1 | hypothetical protein | - |
| AB3450_RS06355 (AB3450_06355) | - | 1295068..1296318 (+) | 1251 | WP_000511067.1 | phage portal protein | - |
| AB3450_RS06360 (AB3450_06360) | - | 1296311..1296895 (+) | 585 | WP_000032525.1 | HK97 family phage prohead protease | - |
| AB3450_RS06365 (AB3450_06365) | - | 1296983..1298230 (+) | 1248 | WP_000849950.1 | phage major capsid protein | - |
| AB3450_RS06370 (AB3450_06370) | - | 1298266..1298424 (+) | 159 | WP_001252099.1 | hypothetical protein | - |
| AB3450_RS06375 (AB3450_06375) | - | 1298433..1298765 (+) | 333 | WP_001177483.1 | head-tail connector protein | - |
| AB3450_RS06380 (AB3450_06380) | - | 1298752..1299087 (+) | 336 | WP_000975314.1 | head-tail adaptor protein | - |
| AB3450_RS06385 (AB3450_06385) | - | 1299087..1299464 (+) | 378 | WP_000501244.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AB3450_RS06390 (AB3450_06390) | - | 1299461..1299841 (+) | 381 | WP_000611454.1 | hypothetical protein | - |
| AB3450_RS06395 (AB3450_06395) | - | 1299842..1300795 (+) | 954 | WP_000570652.1 | major tail protein | - |
| AB3450_RS06400 (AB3450_06400) | - | 1300860..1301306 (+) | 447 | WP_000442601.1 | phage tail assembly chaperone G | - |
| AB3450_RS06405 (AB3450_06405) | - | 1301366..1301488 (+) | 123 | WP_000570353.1 | hypothetical protein | - |
| AB3450_RS06410 (AB3450_06410) | - | 1301544..1306193 (+) | 4650 | WP_001133533.1 | phage tail tape measure protein | - |
| AB3450_RS06415 (AB3450_06415) | - | 1306193..1307683 (+) | 1491 | WP_001154317.1 | phage tail domain-containing protein | - |
| AB3450_RS06420 (AB3450_06420) | - | 1307699..1311480 (+) | 3782 | Protein_1246 | phage tail spike protein | - |
| AB3450_RS06425 (AB3450_06425) | - | 1311473..1311625 (+) | 153 | WP_001000058.1 | hypothetical protein | - |
| AB3450_RS06430 (AB3450_06430) | - | 1311671..1311958 (+) | 288 | WP_001262621.1 | hypothetical protein | - |
| AB3450_RS06435 (AB3450_06435) | - | 1312014..1312388 (+) | 375 | WP_000340977.1 | hypothetical protein | - |
| AB3450_RS06440 (AB3450_06440) | sea | 1312761..1313534 (+) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| AB3450_RS06445 (AB3450_06445) | pepG1 | 1313685..1313819 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| AB3450_RS06450 (AB3450_06450) | - | 1313872..1313979 (-) | 108 | WP_031762631.1 | hypothetical protein | - |
| AB3450_RS06455 (AB3450_06455) | - | 1314027..1314281 (+) | 255 | WP_000611512.1 | phage holin | - |
| AB3450_RS06460 (AB3450_06460) | - | 1314293..1315048 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| AB3450_RS06465 (AB3450_06465) | sak | 1315239..1315730 (+) | 492 | WP_000920038.1 | staphylokinase | - |
| AB3450_RS06470 (AB3450_06470) | - | 1316381..1316716 (+) | 336 | Protein_1256 | SH3 domain-containing protein | - |
| AB3450_RS06475 (AB3450_06475) | scn | 1317228..1317578 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.54 Da Isoelectric Point: 4.9627
>NTDB_id=1025807 AB3450_RS06280 WP_000934765.1 1287605..1288075(+) (ssbA) [Staphylococcus aureus strain TUM20967]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1025807 AB3450_RS06280 WP_000934765.1 1287605..1288075(+) (ssbA) [Staphylococcus aureus strain TUM20967]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |