Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3438_RS06270 | Genome accession | NZ_CP162442 |
| Coordinates | 1288219..1288689 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934765.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain TUM22188 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1262706..1318193 | 1288219..1288689 | within | 0 |
Gene organization within MGE regions
Location: 1262706..1318193
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3438_RS06110 (AB3438_06110) | groES | 1262706..1262990 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| AB3438_RS06115 (AB3438_06115) | groL | 1263066..1264682 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| AB3438_RS06120 (AB3438_06120) | - | 1264777..1265323 (-) | 547 | Protein_1186 | site-specific integrase | - |
| AB3438_RS06125 (AB3438_06125) | - | 1265384..1265596 (+) | 213 | WP_000128898.1 | hypothetical protein | - |
| AB3438_RS06130 (AB3438_06130) | - | 1265593..1266183 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| AB3438_RS06135 (AB3438_06135) | - | 1266500..1266937 (+) | 438 | WP_072419900.1 | hypothetical protein | - |
| AB3438_RS06140 (AB3438_06140) | - | 1267043..1267486 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| AB3438_RS06145 (AB3438_06145) | - | 1268331..1269638 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| AB3438_RS06150 (AB3438_06150) | - | 1269799..1270710 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| AB3438_RS06155 (AB3438_06155) | - | 1270772..1271616 (+) | 845 | Protein_1193 | class I SAM-dependent methyltransferase | - |
| AB3438_RS06160 (AB3438_06160) | - | 1271988..1273211 (-) | 1224 | WP_000206623.1 | ArgE/DapE family deacylase | - |
| AB3438_RS06165 (AB3438_06165) | lukH | 1273647..1274699 (+) | 1053 | WP_000791417.1 | bi-component leukocidin LukGH subunit H | - |
| AB3438_RS06170 (AB3438_06170) | lukG | 1274721..1275737 (+) | 1017 | WP_000595401.1 | bi-component leukocidin LukGH subunit G | - |
| AB3438_RS06175 (AB3438_06175) | sph | 1275975..1276805 (-) | 831 | Protein_1197 | sphingomyelin phosphodiesterase | - |
| AB3438_RS06180 (AB3438_06180) | - | 1276856..1277893 (-) | 1038 | WP_000857182.1 | site-specific integrase | - |
| AB3438_RS06185 (AB3438_06185) | sek | 1277977..1278705 (-) | 729 | WP_000733771.1 | staphylococcal enterotoxin type K | - |
| AB3438_RS06190 (AB3438_06190) | seq | 1278729..1279457 (-) | 729 | WP_001033320.1 | staphylococcal enterotoxin type Q | - |
| AB3438_RS06195 (AB3438_06195) | - | 1279653..1280423 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| AB3438_RS06200 (AB3438_06200) | - | 1280582..1280806 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| AB3438_RS06205 (AB3438_06205) | - | 1280824..1281084 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| AB3438_RS06210 (AB3438_06210) | - | 1281108..1281647 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| AB3438_RS06215 (AB3438_06215) | - | 1281704..1282453 (+) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| AB3438_RS06220 (AB3438_06220) | - | 1282469..1282666 (+) | 198 | WP_001148861.1 | hypothetical protein | - |
| AB3438_RS06225 (AB3438_06225) | - | 1282697..1282837 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| AB3438_RS06230 (AB3438_06230) | - | 1282852..1283484 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| AB3438_RS06235 (AB3438_06235) | - | 1283543..1283863 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| AB3438_RS06240 (AB3438_06240) | - | 1283860..1284021 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| AB3438_RS06245 (AB3438_06245) | - | 1284114..1284374 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| AB3438_RS06250 (AB3438_06250) | - | 1284383..1284646 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| AB3438_RS06255 (AB3438_06255) | - | 1284643..1286598 (+) | 1956 | WP_064138715.1 | AAA family ATPase | - |
| AB3438_RS06260 (AB3438_06260) | - | 1286600..1287520 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| AB3438_RS06265 (AB3438_06265) | - | 1287601..1288218 (+) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| AB3438_RS06270 (AB3438_06270) | ssbA | 1288219..1288689 (+) | 471 | WP_000934765.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3438_RS06275 (AB3438_06275) | - | 1288719..1289612 (+) | 894 | WP_000148328.1 | DnaD domain-containing protein | - |
| AB3438_RS06280 (AB3438_06280) | - | 1289619..1289837 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| AB3438_RS06285 (AB3438_06285) | - | 1289846..1290250 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB3438_RS06290 (AB3438_06290) | - | 1290263..1290514 (+) | 252 | Protein_1220 | SA1788 family PVL leukocidin-associated protein | - |
| AB3438_RS06295 (AB3438_06295) | - | 1290499..1290594 (+) | 96 | Protein_1221 | DUF1381 domain-containing protein | - |
| AB3438_RS06300 (AB3438_06300) | - | 1290591..1290740 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| AB3438_RS06305 (AB3438_06305) | - | 1290899..1291549 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| AB3438_RS06310 (AB3438_06310) | - | 1291549..1291749 (+) | 201 | WP_001570807.1 | DUF1514 family protein | - |
| AB3438_RS06315 (AB3438_06315) | - | 1291772..1292242 (+) | 471 | WP_000282755.1 | hypothetical protein | - |
| AB3438_RS06320 (AB3438_06320) | - | 1292357..1292809 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| AB3438_RS06325 (AB3438_06325) | - | 1292825..1293169 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| AB3438_RS06330 (AB3438_06330) | - | 1293298..1293765 (+) | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
| AB3438_RS06335 (AB3438_06335) | - | 1293768..1295462 (+) | 1695 | WP_000133304.1 | terminase large subunit | - |
| AB3438_RS06340 (AB3438_06340) | - | 1295476..1295676 (+) | 201 | WP_000365299.1 | hypothetical protein | - |
| AB3438_RS06345 (AB3438_06345) | - | 1295682..1296932 (+) | 1251 | WP_000511067.1 | phage portal protein | - |
| AB3438_RS06350 (AB3438_06350) | - | 1296925..1297509 (+) | 585 | WP_000032525.1 | HK97 family phage prohead protease | - |
| AB3438_RS06355 (AB3438_06355) | - | 1297597..1298844 (+) | 1248 | WP_000849950.1 | phage major capsid protein | - |
| AB3438_RS06360 (AB3438_06360) | - | 1298880..1299038 (+) | 159 | WP_001252099.1 | hypothetical protein | - |
| AB3438_RS06365 (AB3438_06365) | - | 1299047..1299379 (+) | 333 | WP_001177483.1 | head-tail connector protein | - |
| AB3438_RS06370 (AB3438_06370) | - | 1299366..1299701 (+) | 336 | WP_000975314.1 | head-tail adaptor protein | - |
| AB3438_RS06375 (AB3438_06375) | - | 1299701..1300078 (+) | 378 | WP_000501244.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AB3438_RS06380 (AB3438_06380) | - | 1300075..1300455 (+) | 381 | WP_000611454.1 | hypothetical protein | - |
| AB3438_RS06385 (AB3438_06385) | - | 1300456..1301409 (+) | 954 | WP_000570652.1 | major tail protein | - |
| AB3438_RS06390 (AB3438_06390) | - | 1301474..1301920 (+) | 447 | WP_000442601.1 | phage tail assembly chaperone G | - |
| AB3438_RS06395 (AB3438_06395) | - | 1301980..1302102 (+) | 123 | WP_000570353.1 | hypothetical protein | - |
| AB3438_RS06400 (AB3438_06400) | - | 1302158..1306807 (+) | 4650 | WP_001133533.1 | phage tail tape measure protein | - |
| AB3438_RS06405 (AB3438_06405) | - | 1306807..1308297 (+) | 1491 | WP_001154317.1 | phage tail domain-containing protein | - |
| AB3438_RS06410 (AB3438_06410) | - | 1308313..1312095 (+) | 3783 | WP_117219101.1 | phage tail spike protein | - |
| AB3438_RS06415 (AB3438_06415) | - | 1312088..1312240 (+) | 153 | WP_001000058.1 | hypothetical protein | - |
| AB3438_RS06420 (AB3438_06420) | - | 1312286..1312573 (+) | 288 | WP_001262621.1 | hypothetical protein | - |
| AB3438_RS06425 (AB3438_06425) | - | 1312629..1313003 (+) | 375 | WP_000340977.1 | hypothetical protein | - |
| AB3438_RS06430 (AB3438_06430) | sea | 1313376..1314149 (+) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| AB3438_RS06435 (AB3438_06435) | pepG1 | 1314300..1314434 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| AB3438_RS06440 (AB3438_06440) | - | 1314487..1314594 (-) | 108 | WP_031762631.1 | hypothetical protein | - |
| AB3438_RS06445 (AB3438_06445) | - | 1314642..1314896 (+) | 255 | WP_000611512.1 | phage holin | - |
| AB3438_RS06450 (AB3438_06450) | - | 1314908..1315663 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| AB3438_RS06455 (AB3438_06455) | sak | 1315854..1316345 (+) | 492 | WP_000920038.1 | staphylokinase | - |
| AB3438_RS06460 (AB3438_06460) | - | 1316996..1317331 (+) | 336 | Protein_1254 | SH3 domain-containing protein | - |
| AB3438_RS06465 (AB3438_06465) | scn | 1317843..1318193 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.54 Da Isoelectric Point: 4.9627
>NTDB_id=1025633 AB3438_RS06270 WP_000934765.1 1288219..1288689(+) (ssbA) [Staphylococcus aureus strain TUM22188]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1025633 AB3438_RS06270 WP_000934765.1 1288219..1288689(+) (ssbA) [Staphylococcus aureus strain TUM22188]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |