Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AB3438_RS06270 | Genome accession | NZ_CP162442 |
| Coordinates | 1288219..1288689 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934765.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain TUM22188 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1283219..1293689
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3438_RS06235 (AB3438_06235) | - | 1283543..1283863 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| AB3438_RS06240 (AB3438_06240) | - | 1283860..1284021 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| AB3438_RS06245 (AB3438_06245) | - | 1284114..1284374 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| AB3438_RS06250 (AB3438_06250) | - | 1284383..1284646 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| AB3438_RS06255 (AB3438_06255) | - | 1284643..1286598 (+) | 1956 | WP_064138715.1 | AAA family ATPase | - |
| AB3438_RS06260 (AB3438_06260) | - | 1286600..1287520 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| AB3438_RS06265 (AB3438_06265) | - | 1287601..1288218 (+) | 618 | WP_072353921.1 | MBL fold metallo-hydrolase | - |
| AB3438_RS06270 (AB3438_06270) | ssbA | 1288219..1288689 (+) | 471 | WP_000934765.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3438_RS06275 (AB3438_06275) | - | 1288719..1289612 (+) | 894 | WP_000148328.1 | DnaD domain-containing protein | - |
| AB3438_RS06280 (AB3438_06280) | - | 1289619..1289837 (+) | 219 | WP_000338527.1 | hypothetical protein | - |
| AB3438_RS06285 (AB3438_06285) | - | 1289846..1290250 (+) | 405 | WP_000401978.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AB3438_RS06290 (AB3438_06290) | - | 1290263..1290514 (+) | 252 | Protein_1220 | SA1788 family PVL leukocidin-associated protein | - |
| AB3438_RS06295 (AB3438_06295) | - | 1290499..1290594 (+) | 96 | Protein_1221 | DUF1381 domain-containing protein | - |
| AB3438_RS06300 (AB3438_06300) | - | 1290591..1290740 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| AB3438_RS06305 (AB3438_06305) | - | 1290899..1291549 (+) | 651 | WP_001005262.1 | hypothetical protein | - |
| AB3438_RS06310 (AB3438_06310) | - | 1291549..1291749 (+) | 201 | WP_001570807.1 | DUF1514 family protein | - |
| AB3438_RS06315 (AB3438_06315) | - | 1291772..1292242 (+) | 471 | WP_000282755.1 | hypothetical protein | - |
| AB3438_RS06320 (AB3438_06320) | - | 1292357..1292809 (+) | 453 | WP_000406191.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| AB3438_RS06325 (AB3438_06325) | - | 1292825..1293169 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.54 Da Isoelectric Point: 4.9627
>NTDB_id=1025633 AB3438_RS06270 WP_000934765.1 1288219..1288689(+) (ssbA) [Staphylococcus aureus strain TUM22188]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTDDNQQDLYQQQAQQTRGQSQYSNNKPVKDNPFANANCPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1025633 AB3438_RS06270 WP_000934765.1 1288219..1288689(+) (ssbA) [Staphylococcus aureus strain TUM22188]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTAAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CACAGATGATAATCAACAAGATTTATACCAACAACAAGCGCAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATTGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |