Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DQN35_RS03540 Genome accession   NZ_LS483442
Coordinates   659618..659800 (+) Length   60 a.a.
NCBI ID   WP_011017964.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8370     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 654618..664800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN35_RS03505 (NCTC8370_00688) - 654922..655359 (+) 438 WP_011285614.1 DUF1617 family protein -
  DQN35_RS03510 (NCTC8370_00689) - 655356..655973 (+) 618 WP_011285613.1 DUF1366 domain-containing protein -
  DQN35_RS03515 (NCTC8370_00690) - 655983..656258 (+) 276 WP_002987582.1 hypothetical protein -
  DQN35_RS03520 (NCTC8370_00691) - 656255..656482 (+) 228 WP_111713458.1 phage holin -
  DQN35_RS03525 (NCTC8370_00692) - 656598..657803 (+) 1206 WP_010922446.1 glucosaminidase domain-containing protein -
  DQN35_RS03530 (NCTC8370_00693) - 657873..658307 (-) 435 WP_011017966.1 hypothetical protein -
  DQN35_RS03535 (NCTC8370_00694) sda3 658579..659379 (-) 801 WP_011285611.1 streptodornase Sda3 -
  DQN35_RS03540 (NCTC8370_00695) prx 659618..659800 (+) 183 WP_011017964.1 hypothetical protein Regulator
  DQN35_RS03545 (NCTC8370_00696) - 660331..662193 (+) 1863 WP_010922444.1 heavy metal translocating P-type ATPase -
  DQN35_RS03550 (NCTC8370_00697) - 662493..663428 (-) 936 WP_010922443.1 dihydroorotate oxidase -
  DQN35_RS03555 (NCTC8370_00698) - 663667..664362 (+) 696 WP_002983928.1 phosphoglycerate mutase -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6841.79 Da        Isoelectric Point: 4.5183

>NTDB_id=1024977 DQN35_RS03540 WP_011017964.1 659618..659800(+) (prx) [Streptococcus pyogenes strain NCTC8370]
MLTYDEFKQAIDNGYIAGDTVAIVRKDGQIFDYVLPHEKVKNGEVVTKEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1024977 DQN35_RS03540 WP_011017964.1 659618..659800(+) (prx) [Streptococcus pyogenes strain NCTC8370]
ATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCGCAGGCGATACAGTAGCGATCGTGCGTAAAGA
CGGACAGATTTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACTAAGGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

100

100

1

  prx Streptococcus pyogenes MGAS315

85

100

0.85

  prx Streptococcus pyogenes MGAS315

80

100

0.8

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

90.244

68.333

0.617

  prx Streptococcus pyogenes MGAS315

83.721

71.667

0.6

  prx Streptococcus pyogenes MGAS315

78.571

70

0.55


Multiple sequence alignment