Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABU640_RS02380 Genome accession   NZ_CP161854
Coordinates   501472..502698 (-) Length   408 a.a.
NCBI ID   WP_000648512.1    Uniprot ID   -
Organism   Vibrio cholerae strain C3616     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 496472..507698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU640_RS02355 (ABU640_02355) parC 496473..498758 (+) 2286 WP_339443584.1 DNA topoisomerase IV subunit A -
  ABU640_RS02360 (ABU640_02360) yacG 498807..499004 (-) 198 WP_000162863.1 DNA gyrase inhibitor YacG -
  ABU640_RS02365 (ABU640_02365) zapD 499162..499902 (-) 741 WP_000207194.1 cell division protein ZapD -
  ABU640_RS02370 (ABU640_02370) coaE 499934..500542 (-) 609 WP_000011550.1 dephospho-CoA kinase -
  ABU640_RS02375 (ABU640_02375) pilD 500539..501414 (-) 876 WP_032476647.1 A24 family peptidase Machinery gene
  ABU640_RS02380 (ABU640_02380) pilC 501472..502698 (-) 1227 WP_000648512.1 type II secretion system F family protein Machinery gene
  ABU640_RS02385 (ABU640_02385) pilB 502741..504429 (-) 1689 WP_032481238.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABU640_RS02390 (ABU640_02390) - 504429..504914 (-) 486 WP_000649332.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABU640_RS02395 (ABU640_02395) nadC 505159..506049 (-) 891 WP_000665269.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABU640_RS02400 (ABU640_02400) ampD 506351..506896 (+) 546 WP_000567314.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ABU640_RS02405 (ABU640_02405) fldB 507175..507693 (-) 519 WP_000690112.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45150.43 Da        Isoelectric Point: 10.3424

>NTDB_id=1022759 ABU640_RS02380 WP_000648512.1 501472..502698(-) (pilC) [Vibrio cholerae strain C3616]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAATIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1022759 ABU640_RS02380 WP_000648512.1 501472..502698(-) (pilC) [Vibrio cholerae strain C3616]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTGTCTCTTTTGGCACGCCTAACCCATCGCGTGAAAAGTAAAGATATTACGATTTTGACTCGGCAGTTAGCGACCATG
CTCACCACGGGCGTACCGATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATTACCAAAAGCGTGGAAGCGGGCACGCCGCTTTCCAAGGCGATGCGTACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAGGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAACAACTACGCGCCAAGGTGATTAAAGCGCTCATCTACCCCAGCATGGTGGTGTTGGTCGCGCTCGGAGTTTC
CTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCAGAACTGCCTTGGTTTACGC
AGCAAGTACTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCCATCGCAGCAACCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCTTTCCAGATCCGTTTAAAAACCAGCCGCTTAGGGCTGAAATTTCCGATTATTGGTAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCGATCCTCGCCA
GTTTAAAAACCACGGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTACATTGCCATGCGCAATACCGACGCTTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGACGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCACTGATCATCGTCTTTCTTGGGACGGTTGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.51

100

0.995
  pilC Vibrio campbellii strain DS40M4

73.75

98.039

0.723
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

41.769

99.755

0.417
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.105

97.794

0.412
  pilG Neisseria gonorrhoeae MS11

40.796

98.529

0.402
  pilG Neisseria meningitidis 44/76-A

40.299

98.529

0.397

Multiple sequence alignment