Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABZM97_RS17895 Genome accession   NZ_CP160797
Coordinates   3576199..3576795 (+) Length   198 a.a.
NCBI ID   WP_003219849.1    Uniprot ID   A0A9W5LL57
Organism   Bacillus vallismortis strain BL-01     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3571199..3581795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS17875 (ABZM97_17875) - 3571417..3572766 (-) 1350 WP_253268582.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  ABZM97_RS17880 (ABZM97_17880) - 3572788..3573459 (-) 672 WP_087993993.1 DUF5819 family protein -
  ABZM97_RS17885 (ABZM97_17885) - 3573515..3573832 (-) 318 WP_253268583.1 hypothetical protein -
  ABZM97_RS17895 (ABZM97_17895) clpP 3576199..3576795 (+) 597 WP_003219849.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ABZM97_RS17900 (ABZM97_17900) pgmB 3576847..3577527 (-) 681 WP_087993795.1 beta-phosphoglucomutase -
  ABZM97_RS17905 (ABZM97_17905) - 3577524..3579209 (-) 1686 WP_087993794.1 alpha-glucosidase -
  ABZM97_RS17910 (ABZM97_17910) - 3579202..3581475 (-) 2274 WP_367387039.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21873.14 Da        Isoelectric Point: 4.7114

>NTDB_id=1022057 ABZM97_RS17895 WP_003219849.1 3576199..3576795(+) (clpP) [Bacillus vallismortis strain BL-01]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1022057 ABZM97_RS17895 WP_003219849.1 3576199..3576795(+) (clpP) [Bacillus vallismortis strain BL-01]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCGG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAAGTATCTACCATTTGTATCGGTATGGCTGCATCAATGGGCGCGTTCCTGCTTGCTGCCGG
CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCGCTTGGCGGTGCGCAAGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGTGACAAATTAAACAAAGTTCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTAATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
TAAAATTCTGACTCGCAACACAGAAGAGCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

96.465

100

0.965
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae Rx1

57.732

97.98

0.566
  clpP Streptococcus pneumoniae D39

57.732

97.98

0.566
  clpP Streptococcus pneumoniae R6

57.732

97.98

0.566
  clpP Streptococcus pneumoniae TIGR4

57.732

97.98

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Streptococcus mutans UA159

55.155

97.98

0.54
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54

Multiple sequence alignment