Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABZP20_RS02525 Genome accession   NZ_CP160433
Coordinates   540969..541490 (+) Length   173 a.a.
NCBI ID   WP_012434936.1    Uniprot ID   A0AAD2BLT3
Organism   Ralstonia sp. CP     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535969..546490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP20_RS02500 (ABZP20_02500) recX 536339..536818 (+) 480 WP_004635401.1 recombination regulator RecX -
  ABZP20_RS02505 (ABZP20_02505) - 537105..537731 (+) 627 WP_012434932.1 DUF2889 domain-containing protein -
  ABZP20_RS02510 (ABZP20_02510) sucC 537798..538964 (+) 1167 WP_012434933.1 ADP-forming succinate--CoA ligase subunit beta -
  ABZP20_RS02515 (ABZP20_02515) sucD 539053..539934 (+) 882 WP_012434934.1 succinate--CoA ligase subunit alpha -
  ABZP20_RS02520 (ABZP20_02520) - 540088..540783 (+) 696 WP_012434935.1 TerC family protein -
  ABZP20_RS02525 (ABZP20_02525) pilA 540969..541490 (+) 522 WP_012434936.1 pilin Machinery gene
  ABZP20_RS02530 (ABZP20_02530) pilA 541743..542252 (+) 510 WP_012434937.1 pilin Machinery gene
  ABZP20_RS02535 (ABZP20_02535) - 542324..544060 (+) 1737 WP_012434938.1 O-antigen ligase family protein -
  ABZP20_RS02540 (ABZP20_02540) pilA 544247..544771 (+) 525 WP_012434939.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABZP20_RS02545 (ABZP20_02545) moaC 544818..545294 (-) 477 WP_012434940.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17673.25 Da        Isoelectric Point: 9.4791

>NTDB_id=1021087 ABZP20_RS02525 WP_012434936.1 540969..541490(+) (pilA) [Ralstonia sp. CP]
MVFKHSKGIKRRAGGFTLIELMIVVAIVGILAALAIPAYQDYTIRSRVTEGLIIAVQAKALVVENAANAQSSLSLGAASL
SATRNVASLDIDGSSGEISIGFTSSVAGAGSNTLILTPYSGTASSTYANLSAGSAPPAVVMWACSANGKQMPPNVNRTGT
PTLDARYAPAECR

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1021087 ABZP20_RS02525 WP_012434936.1 540969..541490(+) (pilA) [Ralstonia sp. CP]
ATGGTTTTCAAGCACAGCAAGGGAATAAAGCGTCGGGCGGGCGGCTTTACGCTGATCGAGCTGATGATTGTGGTGGCGAT
TGTTGGGATTCTCGCGGCGTTGGCGATTCCGGCGTATCAGGACTATACGATTCGGTCGCGGGTGACGGAGGGGCTAATCA
TCGCTGTGCAGGCGAAGGCGCTGGTGGTCGAGAACGCTGCAAACGCACAAAGCAGCCTATCTCTGGGCGCCGCTTCGCTA
TCGGCCACACGAAATGTGGCCTCATTAGACATTGATGGTAGCTCTGGTGAAATTTCCATCGGGTTCACCTCTAGCGTGGC
TGGAGCCGGCAGCAACACGCTAATCCTCACGCCCTACTCAGGCACTGCGTCGTCTACTTACGCGAATCTCAGTGCGGGGT
CGGCTCCTCCAGCAGTCGTCATGTGGGCATGTTCGGCGAATGGCAAGCAAATGCCACCGAACGTCAACCGCACCGGGACG
CCAACTTTGGATGCTCGATATGCTCCGGCGGAGTGCAGATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-35)

Pilin (bacterial filament) (Pilin)

(45-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

56.805

97.688

0.555
  pilA2 Legionella pneumophila str. Paris

45.783

95.954

0.439
  pilA2 Legionella pneumophila strain ERS1305867

45.783

95.954

0.439
  comP Acinetobacter baylyi ADP1

40.462

100

0.405
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.872

100

0.393

Multiple sequence alignment