Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABV589_RS17210 Genome accession   NZ_CP160398
Coordinates   3796342..3798414 (+) Length   690 a.a.
NCBI ID   WP_367082683.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791342..3803414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS17190 (ABV589_17190) pilM 3793554..3794618 (+) 1065 WP_108590281.1 pilus assembly protein PilM Machinery gene
  ABV589_RS17195 (ABV589_17195) - 3794618..3795184 (+) 567 WP_367082680.1 PilN domain-containing protein -
  ABV589_RS17200 (ABV589_17200) pilO 3795181..3795804 (+) 624 WP_027611313.1 type 4a pilus biogenesis protein PilO -
  ABV589_RS17205 (ABV589_17205) - 3795801..3796328 (+) 528 WP_367082682.1 pilus assembly protein PilP -
  ABV589_RS17210 (ABV589_17210) pilQ 3796342..3798414 (+) 2073 WP_367082683.1 type IV pilus secretin PilQ Machinery gene
  ABV589_RS17215 (ABV589_17215) aroK 3798419..3798937 (+) 519 WP_027611316.1 shikimate kinase AroK -
  ABV589_RS17220 (ABV589_17220) aroB 3799089..3800189 (+) 1101 WP_367082684.1 3-dehydroquinate synthase -
  ABV589_RS17225 (ABV589_17225) - 3800200..3801789 (+) 1590 WP_367082686.1 AAA family ATPase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 74900.20 Da        Isoelectric Point: 5.5700

>NTDB_id=1020872 ABV589_RS17210 WP_367082683.1 3796342..3798414(+) (pilQ) [Pseudomonas sp. HOU2]
MNRIFFSLGFSLWIALLSPMVQAASLKTLDVAALPGDRIELKLSFDGPPPQPKGYTTDSPARIALDLPGVASQLASKTRD
LGSGNARTATVVEANDRTRLIINLTQLTPYTSRVEGNNLFVVVGQGAKPAAPRPAAVAPRPVAAPAKAYTPVAKTIRGVD
FQRGTAGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLPDRLRVRLDVKDFATPVQFVNAAATGDRAVITVEPSGTFD
YSTYQTDNKLTVSIRPMTVDDLQKRNADRNSYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPW
DQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAKID
ERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSNGS
STTIGTPGSTSTNSPFVDMGTVGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQE
ASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQ
SKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=1020872 ABV589_RS17210 WP_367082683.1 3796342..3798414(+) (pilQ) [Pseudomonas sp. HOU2]
ATGAACAGGATTTTCTTTAGCCTCGGTTTTTCGCTATGGATAGCGCTGCTTTCACCGATGGTTCAGGCGGCCAGCCTCAA
GACGCTGGATGTCGCGGCGTTACCGGGTGACCGCATCGAGTTGAAGCTGTCGTTCGACGGTCCGCCACCGCAACCCAAGG
GCTACACCACTGATTCGCCGGCGCGAATCGCTCTCGATCTGCCGGGTGTCGCCAGCCAACTGGCAAGCAAGACCCGTGAT
CTGGGCAGCGGCAACGCGCGAACCGCCACGGTAGTCGAGGCTAACGACCGCACGCGCCTGATTATCAACCTGACGCAACT
GACGCCCTACACCTCACGGGTAGAGGGCAACAATCTGTTCGTGGTGGTCGGGCAGGGCGCCAAGCCTGCTGCGCCACGGC
CAGCCGCTGTTGCGCCGCGACCGGTCGCGGCGCCGGCAAAGGCTTATACCCCCGTTGCCAAAACCATTCGTGGCGTCGAC
TTCCAGCGTGGCACCGCGGGGGAGGGCAACGTCGTCATCGACCTGTCGGACCCGACCATCGCCCCGGACATCCAGGAACA
TGACGGCAAGATCATCCTCAGTTTTGCTCGCACGCAGTTGCCCGACAGGCTGCGGGTACGCCTCGACGTCAAGGATTTCG
CCACCCCGGTGCAGTTCGTCAACGCTGCCGCCACCGGTGATCGTGCGGTCATCACCGTCGAACCCAGTGGCACGTTCGAC
TATTCCACCTACCAGACCGACAACAAGCTGACCGTCAGCATTCGCCCGATGACCGTCGATGACCTGCAAAAGCGCAACGC
TGACCGCAACAGCTACAGCGGTGAAAAGCTTTCGCTGAATTTCCAGGACATCGACGTGCGTTCGGTGCTGCAACTGATCG
CCGACTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTGCAGGGCGGGATCACCCTGCGTTTGCAAAACGTGCCGTGG
GATCAGGCGCTGGACCTGGTGCTGAAAACCAAAGGCCTGGACAAGCGCAAGATCGGCAATGTGCTGCTGGTGGCGCCGGC
CGACGAAATCGCTGCCCGTGAACGCCAGGAACTGGAGTCGCAAAAACAGATCGCCGAACTGGCACCGCTGCGCCGCGAGC
TGTTGCAAGTGAATTACGCCAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGCGCCGAGGCGAAAATCGAC
GAGCGTGGCTCGATTACCGTCGATGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGACGAACTGCG
GCGGATCGTGGCGCAACTGGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCGATTACG
ACAAGAGTCTGGGCGTGCGCTGGGGCGGCTCGATCCAGAACAAGGGCAACTGGAACACCTCGGGGGTCAGCAATGGCTCG
TCGACCACCATTGGCACGCCGGGCAGTACCAGCACCAACTCGCCGTTCGTCGACATGGGCACGGTCGGTAACACGTCCGG
GATCGGCATCGCCTTCATCACCGACAACGTGCTGCTCGATCTTGAGCTGACTGCCATGGAGAAAACCGGCAACGGCGAAA
TCGTCTCCCAGCCGAAAGTCGTCACCTCCGACAAGGAGACGGCGAAGATCCTCAAGGGCACCGAGATTCCGTATCAGGAA
GCCAGTTCCAGCGGTGCGACGTCGGTGTCGTTCAAGGAGGCTTCGCTGTCGCTGGAAGTGACGCCGCAGATCACCCCCGA
TAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAACCGGACTACCTGAACAAGGTGCAGGATGTGCCGCCAATCA
AGAAGAACGAGGTCAACGCCAAGGTGCTGGTGAACGACGGCGAGACCATCGTGATTGGCGGTGTTTTCTCAAATACTCAA
AGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTCGGA
GAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(374-439)

Bacterial type II and III secretion system protein (Secretin)

(525-681)

Secretin and TonB N terminus short domain (STN)

(300-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.867

100

0.755
  pilQ Acinetobacter baumannii strain A118

38.121

100

0.412
  pilQ Acinetobacter baumannii D1279779

38.121

100

0.412
  comQ Acinetobacter baylyi ADP1

41.1

100

0.412
  pilQ Legionella pneumophila strain ERS1305867

38.003

97.246

0.37
  pilQ Legionella pneumophila strain Lp02

38.003

97.246

0.37

Multiple sequence alignment