Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABV589_RS17190 Genome accession   NZ_CP160398
Coordinates   3793554..3794618 (+) Length   354 a.a.
NCBI ID   WP_108590281.1    Uniprot ID   -
Organism   Pseudomonas sp. HOU2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3788554..3799618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV589_RS17180 (ABV589_17180) - 3789359..3790627 (+) 1269 WP_007968342.1 malic enzyme-like NAD(P)-binding protein -
  ABV589_RS17185 (ABV589_17185) - 3790890..3793337 (-) 2448 WP_367082678.1 penicillin-binding protein 1A -
  ABV589_RS17190 (ABV589_17190) pilM 3793554..3794618 (+) 1065 WP_108590281.1 pilus assembly protein PilM Machinery gene
  ABV589_RS17195 (ABV589_17195) - 3794618..3795184 (+) 567 WP_367082680.1 PilN domain-containing protein -
  ABV589_RS17200 (ABV589_17200) pilO 3795181..3795804 (+) 624 WP_027611313.1 type 4a pilus biogenesis protein PilO -
  ABV589_RS17205 (ABV589_17205) - 3795801..3796328 (+) 528 WP_367082682.1 pilus assembly protein PilP -
  ABV589_RS17210 (ABV589_17210) pilQ 3796342..3798414 (+) 2073 WP_367082683.1 type IV pilus secretin PilQ Machinery gene
  ABV589_RS17215 (ABV589_17215) aroK 3798419..3798937 (+) 519 WP_027611316.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38131.66 Da        Isoelectric Point: 4.8182

>NTDB_id=1020871 ABV589_RS17190 WP_108590281.1 3793554..3794618(+) (pilM) [Pseudomonas sp. HOU2]
MLGLFNKKTNTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPPNAVVEKNIAELEGVGHALSRVLVKARTGLKSVAV
AVAGSAVITKIIEMDAGLTDDELENQLRIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGKIIYTREQLFGGRQLTEEIQRRYGLTI
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHVLLAGGTASVPGLDRLIEQRLGTPTQVANP
FSDMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1020871 ABV589_RS17190 WP_108590281.1 3793554..3794618(+) (pilM) [Pseudomonas sp. HOU2]
GTGCTGGGACTCTTCAATAAAAAGACCAATACGTTACTGGGGATCGACATCAGCTCCACTTCGGTGAAGCTTTTGGAACT
GAGCCGTCAGGGTGACCGCTACCGGGTCGAGGCGTACGCGGTTGAGCCGCTGCCGCCCAACGCCGTGGTCGAGAAGAACA
TCGCCGAGCTCGAAGGCGTAGGTCATGCCTTGTCCCGCGTGCTGGTCAAGGCGCGGACCGGGCTCAAGAGCGTGGCGGTG
GCGGTGGCCGGTTCCGCGGTGATCACCAAGATCATCGAGATGGACGCCGGGCTGACCGACGACGAGCTGGAAAACCAGCT
CAGGATCGAGGCCGACCAGTACATTCCCTATCCGCTGGACGAAGTCGCCATCGATTTCGAGGTTCAGGGCGTTTCCCCGC
GCAACCCGGAGCGGGTCAACGTGCTGCTGGCCGCATGCCGCAAGGAAAACGTCGAAGTGCGCGAGGCGGCACTGGCGCTG
GCCGGGCTGACCGCGCGAGTGGTCGATGTCGAAGCCTACGCACTGGAGCGCTCGTTCGGCCTGCTCGCCACGCAACTGGC
GGCATCGCAGGAGCGTCTCACGGTGGCGGTGGTGGACATCGGCGCGACCATGACCACCCTCAGTGTTCTGCACAACGGCA
AAATCATTTACACCCGCGAGCAACTGTTCGGTGGGCGGCAACTGACCGAGGAAATCCAGCGCCGGTATGGCCTGACCATC
GAGCAGGCCGGTCTGGCGAAAAAACAGGGCGGCTTGCCCGATGACTACGTCAGCGAGGTGTTGCAGCCGTTCCGGGAGGC
GCTGGTGCAGCAAGTCTCGCGCTCGCTGCAGTTCTTCTTTGCCTCGGGTCAGTACAACGCGGTGGATCACGTTCTGCTGG
CGGGTGGTACGGCATCGGTGCCGGGGCTGGATCGCCTGATCGAGCAGCGCCTGGGCACCCCGACCCAGGTCGCCAACCCG
TTTTCCGACATGGCCCTGAGCAGCAAGGTCAACGCTGGGGCGCTAGCCAGTGACGCGCCGGCCCTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

55.65

100

0.557
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475

Multiple sequence alignment