Detailed information NTG1020287

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: AB0R75_RS16165
• Genome accession: NZ_CP160232
• Coordinates: 3157664..3158350 (-)
• Length: 228 a.a.
• NCBI ID: WP_335349256.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain JJ1622
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3152664..3163350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R75_RS16130 (AB0R75_16130)	fliW	3152798..3153232 (-)	435	WP_144523408.1	flagellar assembly protein FliW	-
AB0R75_RS16135 (AB0R75_16135)	-	3153261..3153839 (-)	579	WP_211063635.1	DUF6470 family protein	-
AB0R75_RS16140 (AB0R75_16140)	flgL	3153888..3154799 (-)	912	WP_144523410.1	flagellar hook-associated protein FlgL	-
AB0R75_RS16145 (AB0R75_16145)	flgK	3154809..3156329 (-)	1521	WP_144523411.1	flagellar hook-associated protein FlgK	-
AB0R75_RS16150 (AB0R75_16150)	-	3156345..3156827 (-)	483	WP_034660146.1	flagellar protein FlgN	-
AB0R75_RS16155 (AB0R75_16155)	flgM	3156845..3157108 (-)	264	WP_144523413.1	flagellar biosynthesis anti-sigma factor FlgM	-
AB0R75_RS16160 (AB0R75_16160)	-	3157188..3157607 (-)	420	WP_335349257.1	TIGR03826 family flagellar region protein	-
AB0R75_RS16165 (AB0R75_16165)	comFC	3157664..3158350 (-)	687	WP_335349256.1	ComF family protein	Machinery gene
AB0R75_RS16170 (AB0R75_16170)	-	3158347..3158640 (-)	294	WP_335349255.1	late competence development ComFB family protein	-
AB0R75_RS16175 (AB0R75_16175)	comFA	3158707..3160086 (-)	1380	WP_335349254.1	DEAD/DEAH box helicase	Machinery gene
AB0R75_RS16180 (AB0R75_16180)	-	3160206..3161048 (-)	843	WP_144523417.1	DegV family protein	-
AB0R75_RS16185 (AB0R75_16185)	degU	3161266..3161955 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AB0R75_RS16190 (AB0R75_16190)	degS	3162020..3163195 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26052.52 Da
• Isoelectric Point: 10.0304

>NTDB_id=1020287 AB0R75_RS16165 WP_335349256.1 3157664..3158350(-) (comFC) [Bacillus pumilus strain JJ1622]
MICLICEGHFVASFTWKSLLLLNDDRLCIACKHHLEKIKRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYV
YNDLMKDVLSRFKFRGDTALAELFKHDAQAVFKRSFSMKEPVLIPIPLSKERQKERGFNQSVIIASLLGQPILQPLVKIH
QSKQSKKKKNERLDQKGMFQIKQIDAIVQRDIILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=1020287 AB0R75_RS16165 WP_335349256.1 3157664..3158350(-) (comFC) [Bacillus pumilus strain JJ1622]
TTGATTTGCCTAATTTGTGAAGGGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTTT
ATGTATAGCATGTAAGCATCACTTAGAAAAAATTAAACGTCCAATTTGTCCAGCTTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAACAGGTCTGTCTATGTT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACATGA
TGCCCAAGCGGTATTTAAGCGCTCCTTTTCAATGAAAGAACCTGTGCTGATCCCAATTCCTTTAAGTAAAGAAAGACAAA
AGGAAAGAGGATTTAATCAGTCCGTCATAATTGCGTCTTTGCTTGGTCAGCCGATTCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAGCAGATAGATGCGAT
CGTTCAAAGGGATATTATCTTAATTGACGATATTTATACAACAGGGGCCACTATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTAATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (140-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus mitis NCTC 12261	38.865	100	0.39
comFC/cflB	Streptococcus mitis SK321	38.865	100	0.39