Detailed information NTG1020290

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: AB0R75_RS16190
• Genome accession: NZ_CP160232
• Coordinates: 3162020..3163195 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain JJ1622
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3157020..3168195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R75_RS16160 (AB0R75_16160)	-	3157188..3157607 (-)	420	WP_335349257.1	TIGR03826 family flagellar region protein	-
AB0R75_RS16165 (AB0R75_16165)	comFC	3157664..3158350 (-)	687	WP_335349256.1	ComF family protein	Machinery gene
AB0R75_RS16170 (AB0R75_16170)	-	3158347..3158640 (-)	294	WP_335349255.1	late competence development ComFB family protein	-
AB0R75_RS16175 (AB0R75_16175)	comFA	3158707..3160086 (-)	1380	WP_335349254.1	DEAD/DEAH box helicase	Machinery gene
AB0R75_RS16180 (AB0R75_16180)	-	3160206..3161048 (-)	843	WP_144523417.1	DegV family protein	-
AB0R75_RS16185 (AB0R75_16185)	degU	3161266..3161955 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
AB0R75_RS16190 (AB0R75_16190)	degS	3162020..3163195 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
AB0R75_RS16195 (AB0R75_16195)	-	3163417..3164085 (+)	669	WP_012011434.1	YigZ family protein	-
AB0R75_RS16200 (AB0R75_16200)	-	3164070..3165161 (+)	1092	WP_335349253.1	LCP family protein	-
AB0R75_RS16205 (AB0R75_16205)	-	3165288..3166640 (-)	1353	WP_366595317.1	IS1182 family transposase	-
AB0R75_RS16210 (AB0R75_16210)	-	3166772..3167839 (-)	1068	WP_144523660.1	glycosyltransferase family 4 protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=1020290 AB0R75_RS16190 WP_003213166.1 3162020..3163195(-) (degS) [Bacillus pumilus strain JJ1622]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=1020290 AB0R75_RS16190 WP_003213166.1 3162020..3163195(-) (degS) [Bacillus pumilus strain JJ1622]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCCGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGCGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTTACCATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGATGATCTAGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTACCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTC
GAAGATGCTCAGGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTATCCCGTGA
AATTCATGACGGTCCGGCTCAGATGCTGGCAAACGTGATGATGCGATCCGAATTAATTGAACGGATTTTTAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATCTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGGAAAACCAAGATCACGTTCCAATGCCTAGGAGATACAGAAAGTGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTGAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGCAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATACGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841