Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AB0R75_RS16185 Genome accession   NZ_CP160232
Coordinates   3161266..3161955 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain JJ1622     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3156266..3166955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R75_RS16150 (AB0R75_16150) - 3156345..3156827 (-) 483 WP_034660146.1 flagellar protein FlgN -
  AB0R75_RS16155 (AB0R75_16155) flgM 3156845..3157108 (-) 264 WP_144523413.1 flagellar biosynthesis anti-sigma factor FlgM -
  AB0R75_RS16160 (AB0R75_16160) - 3157188..3157607 (-) 420 WP_335349257.1 TIGR03826 family flagellar region protein -
  AB0R75_RS16165 (AB0R75_16165) comFC 3157664..3158350 (-) 687 WP_335349256.1 ComF family protein Machinery gene
  AB0R75_RS16170 (AB0R75_16170) - 3158347..3158640 (-) 294 WP_335349255.1 late competence development ComFB family protein -
  AB0R75_RS16175 (AB0R75_16175) comFA 3158707..3160086 (-) 1380 WP_335349254.1 DEAD/DEAH box helicase Machinery gene
  AB0R75_RS16180 (AB0R75_16180) - 3160206..3161048 (-) 843 WP_144523417.1 DegV family protein -
  AB0R75_RS16185 (AB0R75_16185) degU 3161266..3161955 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AB0R75_RS16190 (AB0R75_16190) degS 3162020..3163195 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AB0R75_RS16195 (AB0R75_16195) - 3163417..3164085 (+) 669 WP_012011434.1 YigZ family protein -
  AB0R75_RS16200 (AB0R75_16200) - 3164070..3165161 (+) 1092 WP_335349253.1 LCP family protein -
  AB0R75_RS16205 (AB0R75_16205) - 3165288..3166640 (-) 1353 WP_366595317.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1020289 AB0R75_RS16185 WP_008348273.1 3161266..3161955(-) (degU) [Bacillus pumilus strain JJ1622]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1020289 AB0R75_RS16185 WP_008348273.1 3161266..3161955(-) (degU) [Bacillus pumilus strain JJ1622]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAACTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCCGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCATGAAGTGTATCCTGAAATTCGC
AGACCACTTCATATATTAACAAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGATCGTA
CACAAGCTGTTGTTGTCGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment