Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DQL39_RS02500 Genome accession   NZ_LS483353
Coordinates   466748..466930 (+) Length   60 a.a.
NCBI ID   WP_011017964.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 461748..471930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS02470 (NCTC4001_00487) - 461884..462495 (+) 612 WP_023079933.1 DUF1366 domain-containing protein -
  DQL39_RS02475 (NCTC4001_00488) - 462513..462785 (+) 273 WP_011017397.1 hypothetical protein -
  DQL39_RS02480 (NCTC4001_00489) - 462782..463009 (+) 228 WP_003058873.1 phage holin -
  DQL39_RS02485 (NCTC4001_00491) - 463128..464345 (+) 1218 WP_111718055.1 peptidoglycan amidohydrolase family protein -
  DQL39_RS02490 (NCTC4001_00492) - 464481..465605 (+) 1125 WP_002988467.1 Fic family protein -
  DQL39_RS02495 (NCTC4001_00493) entC3 465853..466635 (+) 783 WP_002988472.1 enterotoxin type C3 EntC3 -
  DQL39_RS02500 (NCTC4001_00494) prx 466748..466930 (+) 183 WP_011017964.1 hypothetical protein Regulator
  DQL39_RS02505 (NCTC4001_00495) cadA 467460..468740 (+) 1281 WP_111718056.1 cadmium family heavy metal-translocating P-type ATPase -
  DQL39_RS02510 (NCTC4001_00496) - 469040..469975 (-) 936 WP_010922443.1 dihydroorotate oxidase -
  DQL39_RS02515 (NCTC4001_00497) - 470214..470909 (+) 696 WP_002983928.1 phosphoglycerate mutase -
  DQL39_RS02520 (NCTC4001_00498) - 471016..471537 (+) 522 WP_011017960.1 transcription repressor NadR -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6841.79 Da        Isoelectric Point: 4.5183

>NTDB_id=1019765 DQL39_RS02500 WP_011017964.1 466748..466930(+) (prx) [Streptococcus pyogenes strain NCTC4001]
MLTYDEFKQAIDNGYIAGDTVAIVRKDGQIFDYVLPHEKVKNGEVVTKEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1019765 DQL39_RS02500 WP_011017964.1 466748..466930(+) (prx) [Streptococcus pyogenes strain NCTC4001]
ATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCGCAGGCGATACAGTAGCGATCGTGCGTAAAGA
CGGACAGATTTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACTAAGGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

100

100

1

  prx Streptococcus pyogenes MGAS315

85

100

0.85

  prx Streptococcus pyogenes MGAS315

80

100

0.8

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

90.244

68.333

0.617

  prx Streptococcus pyogenes MGAS315

83.721

71.667

0.6

  prx Streptococcus pyogenes MGAS315

78.571

70

0.55


Multiple sequence alignment