Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB0R82_RS12355 Genome accession   NZ_CP160220
Coordinates   2417375..2417671 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain JM553     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2412375..2422671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS12310 (AB0R82_12310) tasA 2412783..2413568 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  AB0R82_RS12315 (AB0R82_12315) sipW 2413632..2414204 (-) 573 WP_072692741.1 signal peptidase I SipW -
  AB0R82_RS12320 (AB0R82_12320) tapA 2414188..2414949 (-) 762 WP_198878634.1 amyloid fiber anchoring/assembly protein TapA -
  AB0R82_RS12325 (AB0R82_12325) yqzG 2415221..2415547 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  AB0R82_RS12330 (AB0R82_12330) spoIITA 2415589..2415768 (-) 180 WP_072175549.1 YqzE family protein -
  AB0R82_RS12335 (AB0R82_12335) comGG 2415839..2416213 (-) 375 WP_133953114.1 ComG operon protein ComGG Machinery gene
  AB0R82_RS12340 (AB0R82_12340) comGF 2416214..2416597 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  AB0R82_RS12345 (AB0R82_12345) comGE 2416623..2416970 (-) 348 WP_080529537.1 ComG operon protein 5 Machinery gene
  AB0R82_RS12350 (AB0R82_12350) comGD 2416954..2417385 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  AB0R82_RS12355 (AB0R82_12355) comGC 2417375..2417671 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  AB0R82_RS12360 (AB0R82_12360) comGB 2417685..2418722 (-) 1038 WP_044052501.1 comG operon protein ComGB Machinery gene
  AB0R82_RS12365 (AB0R82_12365) comGA 2418709..2419779 (-) 1071 WP_129134318.1 competence protein ComGA Machinery gene
  AB0R82_RS12370 (AB0R82_12370) - 2419991..2420188 (-) 198 WP_129134319.1 hypothetical protein -
  AB0R82_RS12375 (AB0R82_12375) corA 2420190..2421143 (-) 954 WP_198878633.1 magnesium transporter CorA -
  AB0R82_RS12380 (AB0R82_12380) yqhB 2421286..2422611 (+) 1326 WP_198878632.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=1019701 AB0R82_RS12355 WP_003230162.1 2417375..2417671(-) (comGC) [Bacillus subtilis strain JM553]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1019701 AB0R82_RS12355 WP_003230162.1 2417375..2417671(-) (comGC) [Bacillus subtilis strain JM553]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAACCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment