Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQM50_RS04985 Genome accession   NZ_LS483347
Coordinates   916902..917090 (+) Length   62 a.a.
NCBI ID   WP_032461628.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8324     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 911902..922090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM50_RS04960 (NCTC8324_01003) - 913331..913762 (+) 432 WP_002987513.1 DUF1617 family protein -
  DQM50_RS04965 (NCTC8324_01004) - 913765..914382 (+) 618 WP_032461328.1 DUF1366 domain-containing protein -
  DQM50_RS04970 (NCTC8324_01005) - 914392..914664 (+) 273 WP_111688471.1 hypothetical protein -
  DQM50_RS04975 (NCTC8324_01006) - 914661..914888 (+) 228 WP_003058873.1 phage holin -
  DQM50_RS04980 (NCTC8324_01008) - 915004..916206 (+) 1203 WP_111688472.1 glucosaminidase domain-containing protein -
  DQM50_RS04985 (NCTC8324_01010) prx 916902..917090 (+) 189 WP_032461628.1 hypothetical protein Regulator
  DQM50_RS04995 (NCTC8324_01012) - 917681..918295 (+) 615 WP_002989607.1 TVP38/TMEM64 family protein -
  DQM50_RS05000 (NCTC8324_01013) - 918428..919213 (-) 786 WP_023078569.1 hypothetical protein -
  DQM50_RS05005 (NCTC8324_01014) - 919223..919921 (-) 699 WP_023078568.1 ABC transporter ATP-binding protein -
  DQM50_RS05010 (NCTC8324_01015) - 919921..920292 (-) 372 WP_002989617.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7312.35 Da        Isoelectric Point: 4.1813

>NTDB_id=1019195 DQM50_RS04985 WP_032461628.1 916902..917090(+) (prx) [Streptococcus pyogenes strain NCTC8324]
MLTYDEFKQAIDNGYITADTVMIVRKNEQIFDYVLPHEKVKNGEVVTEEKVEEVMVELDYIK

Nucleotide


Download         Length: 189 bp        

>NTDB_id=1019195 DQM50_RS04985 WP_032461628.1 916902..917090(+) (prx) [Streptococcus pyogenes strain NCTC8324]
ATGCTAACATACGACGAATTTAAGCAAGCAATTGACAATGGATATATCACAGCAGACACAGTTATGATCGTGCGTAAAAA
CGAACAGATTTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACCGAGGAGAAGGTGGAAGAAG
TGATGGTGGAATTAGACTATATCAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

88.71

100

0.887
  prx Streptococcus pyogenes MGAS8232

87.931

93.548

0.823
  prx Streptococcus pyogenes MGAS315

87.931

93.548

0.823
  prx Streptococcus pyogenes MGAS315

81.356

95.161

0.774
  prx Streptococcus pyogenes MGAS315

79.661

95.161

0.758
  prx Streptococcus pyogenes MGAS315

85.366

66.129

0.565
  prx Streptococcus pyogenes MGAS315

73.81

67.742

0.5