Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQL04_RS03560 Genome accession   NZ_LS483340
Coordinates   669921..670103 (+) Length   60 a.a.
NCBI ID   WP_011184726.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12062     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 664921..675103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL04_RS03530 (NCTC12062_00696) - 665659..666087 (+) 429 WP_011184732.1 DUF1617 family protein -
  DQL04_RS03535 (NCTC12062_00697) - 666090..666701 (+) 612 WP_011184731.1 DUF1366 domain-containing protein -
  DQL04_RS03540 (NCTC12062_00698) - 666711..667166 (+) 456 WP_011184730.1 phage holin family protein -
  DQL04_RS03545 (NCTC12062_00700) - 667284..668036 (+) 753 WP_030126404.1 CHAP domain-containing protein -
  DQL04_RS03550 (NCTC12062_00701) speC 668105..668812 (-) 708 WP_002985327.1 streptococcal pyrogenic exotoxin SpeC -
  DQL04_RS03555 (NCTC12062_00702) mf2 668923..669681 (-) 759 WP_011184727.1 DNase Mf2 -
  DQL04_RS03560 (NCTC12062_00703) prx 669921..670103 (+) 183 WP_011184726.1 hypothetical protein Regulator
  DQL04_RS03565 (NCTC12062_00704) - 670635..672497 (+) 1863 WP_047235759.1 heavy metal translocating P-type ATPase -
  DQL04_RS03570 (NCTC12062_00705) - 672797..673732 (-) 936 WP_047235760.1 dihydroorotate oxidase -
  DQL04_RS03575 (NCTC12062_00706) - 673971..674666 (+) 696 WP_002983928.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6936.91 Da        Isoelectric Point: 4.1954

>NTDB_id=1018675 DQL04_RS03560 WP_011184726.1 669921..670103(+) (prx) [Streptococcus pyogenes strain NCTC12062]
MLTYDEFKQAIDNGYITADTVMIVRKNGQIFDYVLPNEKIKNGEIVTDEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=1018675 DQL04_RS03560 WP_011184726.1 669921..670103(+) (prx) [Streptococcus pyogenes strain NCTC12062]
ATGCTAACATACGACGAATTTAAACAAGCAATTGACAATGGATATATCACAGCAGACACAGTAATGATCGTGCGCAAGAA
CGGACAGATTTTTGATTATGTGTTGCCGAATGAGAAGATAAAGAATGGAGAAATTGTGACAGACGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

98.333

100

0.983
  prx Streptococcus pyogenes MGAS8232

86.667

100

0.867
  prx Streptococcus pyogenes MGAS315

78.333

100

0.783
  prx Streptococcus pyogenes MGAS315

75

100

0.75
  prx Streptococcus pyogenes MGAS315

83.721

71.667

0.6
  prx Streptococcus pyogenes MGAS315

85.366

68.333

0.583
  prx Streptococcus pyogenes MGAS315

71.429

70

0.5